PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013851m | ||||||||
Common Name | CARUB_v10013851mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 407aa MW: 44462.9 Da PI: 7.1138 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.7 | 1.5e-36 | 42 | 139 | 2 | 103 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceae 76 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LGfd++sk+++WL+++ak++i+el+++ Carubv10013851m 42 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELAELppwnpadairlaaanakprR---------- 125 79**************************************************************66555555544443222221.......... PP TCP 77 sssssasnsssgkaaksaa.kskksqks 103 ++++ s ++q++ Carubv10013851m 126 --------------TSAKTqISPPQQQQ 139 ..............11111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-32 | 42 | 139 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.016 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MAGEFLHPPP PSSMRHRSTS EAADGGCGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLSAHTAI QFYDVQDRLG FDRPSKAVDW LIKKAKTSID ELAELPPWNP ADAIRLAAAN 120 AKPRRTSAKT QISPPQQQQP QLQFGVGFDG GGTEHPTNND NDSSFLPPSM DSDSIADTIK 180 SFFPVVGSST EAPQNHQLIH NYHHPPDLLS RTNSQNQDLR LSLHSFPDGP PSLLHHHNHT 240 SASASEPALF YGQSNPLGFD TPSSVSWEQQ SSEFGRIQRL VAWNSGATDT GNGGGFLFAP 300 PPSFQPVLGQ SQQLYSQRGP LQSSYSPMIR AWFDPHQHHQ SISTDDLNHH HHLPPPVHQS 360 AIPGIGFASG EFSSGFRIPA RFQGQEEEQH DGLNHKPSSA SSISRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 5e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013851m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316704 | 0.0 | AK316704.1 Arabidopsis thaliana AT3G15030 mRNA, complete cds, clone: RAFL06-89-F15. | |||
GenBank | AP000370 | 0.0 | AP000370.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K15M2. | |||
GenBank | AY094444 | 0.0 | AY094444.1 Arabidopsis thaliana AT3g15030/K15M2_17 mRNA, complete cds. | |||
GenBank | AY149957 | 0.0 | AY149957.1 Arabidopsis thaliana At3g15030/K15M2_17 mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006297817.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 0.0 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | R0HYP1 | 0.0 | R0HYP1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297817.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 0.0 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013851m |
Entrez Gene | 17891485 |