PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013808m
Common NameCARUB_v10013808mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HSF
Protein Properties Length: 418aa    MW: 48079 Da    PI: 4.6377
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013808mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.72.5e-35651572103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++ed+++++++sws+++nsf+v+d++ f+  +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+
  Carubv10013808m  65 FLTKTYDLVEDSRTNHVVSWSKSNNSFIVWDPQAFSVILLPRFFKHNNFSSFVRQLNTYGFRKVNPDR---------WEFANEGFLRGQKHLLK 149
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Carubv10013808m 150 NIRRRKTS 157
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.57E-3660154IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-3861154IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.4E-5961154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-196588IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.4E-3165154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-19103115IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340104128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-19116128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDPSFRFIKE EFPTGFSDSL SSPSSSSSSS YLYSSSMAEA SPYDPTTLSY PQPVEGLHES  60
GPPPFLTKTY DLVEDSRTNH VVSWSKSNNS FIVWDPQAFS VILLPRFFKH NNFSSFVRQL  120
NTYGFRKVNP DRWEFANEGF LRGQKHLLKN IRRRKTSNNS NQVQQSNSSE QQALDNCCIE  180
VGRYGLDGEM DSLRRDKQVL MMELVRLRQQ QQSTKMYLTT IEEKLKKTES KQQQMMSFLA  240
RAMQNPDFIQ QLVEQKEKRK EIEEAISKKR QRPIDQGKIN VVNVGDYDDE SGYGNDAAAS  300
TSAFLDMNQE TYGNMSQFEM SELDRLAMHI QGLGDHSSTR EEVLNVERGN EEEEEEDLQQ  360
QGYNQKVDKE IYGEGFWEDL LNEGQNFDFE GDQENVDVLI EQLGYLGSSS HTNFRRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-256015712123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013808m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459740.0AY045974.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
GenBankAY0793740.0AY079374.1 Arabidopsis thaliana putative heat shock protein (At3g22830) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297773.10.0heat stress transcription factor A-6b
SwissprotQ9LUH80.0HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLR0G5K10.0R0G5K1_9BRAS; Uncharacterized protein
STRINGXP_006297773.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.10.0heat shock transcription factor A6B