PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10013749m | ||||||||
Common Name | CARUB_v10013748mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 434aa MW: 49485.3 Da PI: 7.4047 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.6 | 3.7e-41 | 149 | 314 | 2 | 135 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasecea 75 + ++drhski T++g RdRR+Rls+++a+++F Lqd+LGfdk+skt+eWLl+qakp+i+++++t s +++s+ Carubv10013749m 149 PSRTDRHSKIKTAKGTRDRRMRLSLDVARELFGLQDMLGFDKASKTVEWLLTQAKPEIIKIAKTlshqcgfssgdesqtrpalgSMDTSSDL-- 240 5799************************************************************8888877666666555555433333333.. PP TCP 76 esssssasnsssg..........................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 + ++ k+k+++ ++ +l+k++rakar+ra++rt ekm++k k Carubv10013749m 241 ------------YelasmwtvddrgsntnttvetrgnkvDGRSMRGKRKRPEPRTPILKKLSKDERAKARERAKDRTMEKMMMKMK 314 ............0233333333333335566777888876666666788888888888*************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.0E-41 | 150 | 312 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.39 | 151 | 209 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.574 | 291 | 308 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MNNNTFSSTT TTINDDYMLF PYNDHYSSQA VLPFSPSSSF NDILIQSTSN TSNNHLDHHP 60 HQFLQPSPFS QFEFVPDCSL LSSFLPQNNG HDDNQEIITN DNHHPSLLHP LNNTIGDQPA 120 EPSETITHIE DSQTISTSQD QKMKKAKKPS RTDRHSKIKT AKGTRDRRMR LSLDVARELF 180 GLQDMLGFDK ASKTVEWLLT QAKPEIIKIA KTLSHQCGFS SGDESQTRPA LGSMDTSSDL 240 YELASMWTVD DRGSNTNTTV ETRGNKVDGR SMRGKRKRPE PRTPILKKLS KDERAKARER 300 AKDRTMEKMM MKMKGRSQLV KVVEEGVHHQ GDQIVKNDIS KVNQSSFKVT HCEEDIEELG 360 KNDRFAVCND FVMTKKDHIS NESYDIINKL NSPFPIHHHR SQGEANSIEH QFTELHHFLP 420 KPRDLMYNYQ NMC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924, ECO:0000269|PubMed:17452340}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10013749m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF062581 | 0.0 | EF062581.1 Arabidopsis thaliana teosinte branched 1-like 1 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023642532.1 | 0.0 | transcription factor TCP18 isoform X2 | ||||
Swissprot | A1YKT1 | 0.0 | TCP18_ARATH; Transcription factor TCP18 | ||||
TrEMBL | R0G5F6 | 0.0 | R0G5F6_9BRAS; Uncharacterized protein | ||||
STRING | XP_006297719.1 | 0.0 | (Capsella rubella) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 0.0 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10013749m |
Entrez Gene | 17890843 |