PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013706m
Common NameCARUB_v10013698mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 446aa    MW: 49245.8 Da    PI: 6.6998
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013706mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31235289155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Carubv10013706m 235 KPRMRWTPELHESFVNSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 289
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-29233290IPR009057Homeodomain-like
SuperFamilySSF466899.5E-16234289IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23235290IPR006447Myb domain, plants
PfamPF002491.7E-7237288IPR001005SANT/Myb domain
PfamPF143793.5E-22325372IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNRHSLVSVA PDKCNEEVGQ SCSSSLSPVH NFLNVQPETR KSPFIRSQSP DSPGQLWPKH  60
SSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNCLPFLPDP SSYSHSASGV ESARSPSIFS  120
EDLGNQYDGN NSGSLVKDFL NLSGDVCSDG GFHDFGCSND SYCLSDQMEL QFLSDELELA  180
ISDRAETPRL DIYETPLASV NPVTRLSPSQ SCVAGAVSTD VVSSHPSPGS AANHKPRMRW  240
TPELHESFVN SVIKLEGPEK ATPKAVLKLM NVEGLTIYHV KSHLQKYRLA KYMPEKKEGK  300
KNDNSEEKKL AFSNSEADGK RKGAIQLTEA LRMQMEVQKQ LHEQLEVQRV LQLRIEEHAK  360
YLEKMLEEQR KTGRLISSSS PSQTVLSPSD ESIENSENLS KTKASSPQPS SSTKNKASET  420
EGNMCESPQK RRRLENKAES EDPKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-23235292259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429433KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013706m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297672.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLR0HLK20.0R0HLK2_9BRAS; Uncharacterized protein
STRINGXP_006297672.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]