PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013698m
Common NameCARUB_v10013698mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family G2-like
Protein Properties Length: 447aa    MW: 49374.9 Da    PI: 6.5743
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013698mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1001.6e-31236290155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr+rWtpeLHe+Fv+ v +L G+ekAtPk++l+lm+v+gLt++hvkSHLQkYRl
  Carubv10013698m 236 KPRMRWTPELHESFVNSVIKLEGPEKATPKAVLKLMNVEGLTIYHVKSHLQKYRL 290
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-29234291IPR009057Homeodomain-like
SuperFamilySSF466899.5E-16235290IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-23236291IPR006447Myb domain, plants
PfamPF002491.7E-7238289IPR001005SANT/Myb domain
PfamPF143793.5E-22326373IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MNRHSLVSVA PDKCNEEVGQ SCSSSLSPVH NFLNVQPETR KSPFIRSQSP DSPGQLWPKH  60
SSQSTFSRSS TFCTNLYLSS SSTSETQKHL GNCLPFLPDP SSYSHSASGV ESARSPSIFS  120
EDLGNQYDGN NSGSLVKDFL NLSGDVCSDG GFHDFGCSND SYCLSDQMEL QFLSDELELA  180
ISDRAETPRL DEIYETPLAS VNPVTRLSPS QSCVAGAVST DVVSSHPSPG SAANHKPRMR  240
WTPELHESFV NSVIKLEGPE KATPKAVLKL MNVEGLTIYH VKSHLQKYRL AKYMPEKKEG  300
KKNDNSEEKK LAFSNSEADG KRKGAIQLTE ALRMQMEVQK QLHEQLEVQR VLQLRIEEHA  360
KYLEKMLEEQ RKTGRLISSS SPSQTVLSPS DESIENSENL SKTKASSPQP SSSTKNKASE  420
TEGNMCESPQ KRRRLENKAE SEDPKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-23236293259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1430434KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013698m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508890.0AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0966740.0AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297672.10.0myb family transcription factor PHL6
SwissprotQ949U20.0PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLR0HYE10.0R0HYE1_9BRAS; Uncharacterized protein
STRINGXP_006297672.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67862744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.20.0G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]