PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10013697m

Common Name

CARUB_v10013614mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 448aa MW: 50490.8 Da PI: 4.6542

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013697m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.5	4.8e-31	281	335	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav++ GG +kAtPk +l++m+v+gL ++hvkSHLQkYR+ Carubv10013697m 281 KRRMRWTPELHEVFVEAVNHFGGVNKATPKGVLKHMNVEGLNIYHVKSHLQKYRS 335 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.957	278	338	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.0E-29	279	337	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-17	280	335	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-23	281	335	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	283	334	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-17	368	411	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPAEMSFDSE QNQLMEMPYH LLSDNDGVVD 60 LYSSDLSAND GAVGYISSSD LSANDGAVGH IYSSDLHNSF VPESSDWVRS PLGDIFYFPE 120 GSPIQSSQMD DSVILASDDG DSMMSAVMDE LFLATDFNSA SEVQQPSMQL QIQQPLHEDI 180 LFQVQQPSPQ SQIQQTMHEE RLFQVEQQSR QSQIQQPQVS LHEEMFFQDQ QQSRQSHIQQ 240 PQVVLQQPSP CVELRPLVRT VSSNSNFNNS SSNSDNNAAA KRRMRWTPEL HEVFVEAVNH 300 FGGVNKATPK GVLKHMNVEG LNIYHVKSHL QKYRSARHTS EPSEASPETK LSPFEQITSI 360 DTKRGIYITE ALRFQLEAQK QLHEQLEIQR KMQIRLEEQG NALSLMIEKQ KLVFGKLAQE 420 EKTSAKTPEN GSEESDSPRS KRQRNKE*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPAEMSFDSE QNQLMEMPYH LLSDNDGVVD  60
LYSSDLSAND GAVGYISSSD LSANDGAVGH IYSSDLHNSF VPESSDWVRS PLGDIFYFPE  120
GSPIQSSQMD DSVILASDDG DSMMSAVMDE LFLATDFNSA SEVQQPSMQL QIQQPLHEDI  180
LFQVQQPSPQ SQIQQTMHEE RLFQVEQQSR QSQIQQPQVS LHEEMFFQDQ QQSRQSHIQQ  240
PQVVLQQPSP CVELRPLVRT VSSNSNFNNS SSNSDNNAAA KRRMRWTPEL HEVFVEAVNH  300
FGGVNKATPK GVLKHMNVEG LNIYHVKSHL QKYRSARHTS EPSEASPETK LSPFEQITSI  360
DTKRGIYITE ALRFQLEAQK QLHEQLEIQR KMQIRLEEQG NALSLMIEKQ KLVFGKLAQE  420
EKTSAKTPEN GSEESDSPRS KRQRNKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-26	280	338	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013697m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641974.1	0.0	myb family transcription factor PHL4
Swissprot	Q8GXC2	1e-108	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	R0HLC1	0.0	R0HLC1_9BRAS; Uncharacterized protein
STRING	XP_006297592.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	3e-82	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10013697m
Entrez Gene	17890982

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]