PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10013632m

Common Name

CARUB_v10013632mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

bHLH

Protein Properties

Length: 468aa MW: 50505.9 Da PI: 6.6789

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013632m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.6e-06	356	394	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ ++++ L++l+ + +K + a++L +A+eYIk L Carubv10013632m 356 VRKEKMGDRIAALQQLVSPF-----GKTDAASVLSEAIEYIKFL 394 5778999*********98.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.659	345	394	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0067	351	400	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-11	355	409	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.24E-6	355	399	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.9E-10	359	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
VIEKAMGDHH DFINSGSWWK VSSSSSPSSS SSMRASSIES GGSAVFHDKL HHHHHSLAST 60 TDHHLQMIGL GLSSQSPVDQ WNQSLLRGDS KAETSFGVML QENLNLDASS NANANTTSST 120 SSYQLQESDS SHHQALWRDP QTDFKPQTIM TNNNRGFFLD HQFSPHGSSS TDSSTVTCQG 180 FAVDNSSNNS LYAAAATTTP NSSSGMFHQH QLASGFGSSD QQPPRNHQQS SLGYSQYGSS 240 TANYDQMASA LPSTWFLRAS PPKPHSPLRF SNNATFWNPA AAGNTGPPPP HDASSNFFPA 300 LQPPQIHAPS FDEQSKNISE TRDSSNNEVK RGGGGDQPAA KRAKSEAASP SPALKVRKEK 360 MGDRIAALQQ LVSPFGKTDA ASVLSEAIEY IKFLHQQVSA LSNPYMKSGA SLQHQQSDHH 420 QPNEVEVSEE PDLRSRGLCL VPVSSTFPVT HDTTVDFWTP TFGGTFR*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

VIEKAMGDHH DFINSGSWWK VSSSSSPSSS SSMRASSIES GGSAVFHDKL HHHHHSLAST  60
TDHHLQMIGL GLSSQSPVDQ WNQSLLRGDS KAETSFGVML QENLNLDASS NANANTTSST  120
SSYQLQESDS SHHQALWRDP QTDFKPQTIM TNNNRGFFLD HQFSPHGSSS TDSSTVTCQG  180
FAVDNSSNNS LYAAAATTTP NSSSGMFHQH QLASGFGSSD QQPPRNHQQS SLGYSQYGSS  240
TANYDQMASA LPSTWFLRAS PPKPHSPLRF SNNATFWNPA AAGNTGPPPP HDASSNFFPA  300
LQPPQIHAPS FDEQSKNISE TRDSSNNEVK RGGGGDQPAA KRAKSEAASP SPALKVRKEK  360
MGDRIAALQQ LVSPFGKTDA ASVLSEAIEY IKFLHQQVSA LSNPYMKSGA SLQHQQSDHH  420
QPNEVEVSEE PDLRSRGLCL VPVSSTFPVT HDTTVDFWTP TFGGTFR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013632m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118054	0.0	AK118054.1 Arabidopsis thaliana At3g20640 mRNA for putative bHLH transcription factor (bHLH123), complete cds, clone: RAFL19-30-D14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006297611.2	0.0	transcription factor bHLH123
Swissprot	Q8GXT3	0.0	BH123_ARATH; Transcription factor bHLH123
TrEMBL	R0HLE7	0.0	R0HLE7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_006297611.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4024	25	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Carubv10013632m
Entrez Gene	17893563

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]