PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10013614m

Common Name

CARUB_v10013614mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

G2-like

Protein Properties

Length: 473aa MW: 53466 Da PI: 4.6776

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10013614m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.4	5.2e-31	305	359	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWtpeLHe Fveav++ GG +kAtPk +l++m+v+gL ++hvkSHLQkYR+ Carubv10013614m 305 KRRMRWTPELHEVFVEAVNHFGGVNKATPKGVLKHMNVEGLNIYHVKSHLQKYRS 359 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.957	302	362	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-29	303	361	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.05E-17	304	359	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.1E-23	305	359	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	307	358	IPR001005	SANT/Myb domain
Pfam	PF14379	1.9E-17	393	436	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPAEMSFDSE QNQLMEMPYH LLSDNDGVVD 60 LYSSDLSAND GAVGYISSSD LSANDGAVGH IYSSDLHNSF VPESSDWVRS PLGDIFYFPE 120 GSPIQSSQMD DSVILASDDG DSMMSAVMDE LFLATDFNSA SEVQQPSMQL QIQQPLHEDI 180 LFQVQQPSPQ SQIQQTMHEE RLFQVEQQSR QSQIQHPQVS LHEEMLFQDQ QQSRQSQIQQ 240 PQVSLHEEMF FQDQQQSRQS HIQQPQVVLQ QPSPCVELRP LVRTVSSNSN FNNSSSNSDN 300 NAAAKRRMRW TPELHEVFVE AVNHFGGVNK ATPKGVLKHM NVEGLNIYHV KSHLQKYRSA 360 RHTSEPSEAA SPETKLSPFE QITSIDTKRG IYITEALRFQ LEAQKQLHEQ LEIQRKMQIR 420 LEEQGNALSL MIEKQKLVFG KLAQEEKTSA KTPENGSEES DSPRSKRQRN KE*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MENRRSRSVP DELSDVSDTS DLIPSVQNPS VPAEMSFDSE QNQLMEMPYH LLSDNDGVVD  60
LYSSDLSAND GAVGYISSSD LSANDGAVGH IYSSDLHNSF VPESSDWVRS PLGDIFYFPE  120
GSPIQSSQMD DSVILASDDG DSMMSAVMDE LFLATDFNSA SEVQQPSMQL QIQQPLHEDI  180
LFQVQQPSPQ SQIQQTMHEE RLFQVEQQSR QSQIQHPQVS LHEEMLFQDQ QQSRQSQIQQ  240
PQVSLHEEMF FQDQQQSRQS HIQQPQVVLQ QPSPCVELRP LVRTVSSNSN FNNSSSNSDN  300
NAAAKRRMRW TPELHEVFVE AVNHFGGVNK ATPKGVLKHM NVEGLNIYHV KSHLQKYRSA  360
RHTSEPSEAA SPETKLSPFE QITSIDTKRG IYITEALRFQ LEAQKQLHEQ LEIQRKMQIR  420
LEEQGNALSL MIEKQKLVFG KLAQEEKTSA KTPENGSEES DSPRSKRQRN KE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-25	304	362	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in male gametophyte development. {ECO:0000269\|PubMed:22101548}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00111	ampDAP	Transfer from AT2G20400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10013614m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023641974.1	0.0	myb family transcription factor PHL4
Swissprot	Q8GXC2	2e-91	PHL4_ARATH; Myb family transcription factor PHL4
TrEMBL	R0HY84	0.0	R0HY84_9BRAS; Uncharacterized protein
STRING	XP_006297592.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM856	27	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20400.1	2e-80	G2-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10013614m
Entrez Gene	17890982

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]