PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013546m
Common NameCARUB_v10013546mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family WRKY
Protein Properties Length: 490aa    MW: 53696.6 Da    PI: 7.2252
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013546mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-29131189160
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      ++DgynWrKYGqK vkg+ef rsYYrCt+++C++kk++ers   ++vv+++Y  eH+h+k
  Carubv10013546m 131 MEDGYNWRKYGQKLVKGNEFVRSYYRCTYPNCKAKKQLERSP-GGQVVDTVYFAEHDHPK 189
                      58****************************************.***************85 PP
2WRKY106.41.5e-33303361159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dgy+WrKYGqK+vkgs++prsYYrC+s+gCpvkk+vers++d+k++++tYeg+H+h 
  Carubv10013546m 303 VNDGYRWRKYGQKSVKGSPYPRSYYRCSSSGCPVKKHVERSSQDTKLLITTYEGKHDHA 361
                      58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.987126190IPR003657WRKY domain
SuperFamilySSF1182905.75E-24127190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-25127190IPR003657WRKY domain
SMARTSM007749.3E-33131189IPR003657WRKY domain
PfamPF031068.8E-23132188IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-34290363IPR003657WRKY domain
SuperFamilySSF1182902.88E-28297363IPR003657WRKY domain
PROSITE profilePS5081134.13298363IPR003657WRKY domain
SMARTSM007741.8E-38303362IPR003657WRKY domain
PfamPF031062.0E-26304360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAEVDKVPVS DMELDGSSET KAAVDGVVVA DKTEATSVTV TRTDVVLADK TEATPVTVTR  60
TEVVVEGCQT ESSKSVDCKE QLVPQITASQ SEVDVASPTS EKAPKVSESS TVLSLQSTSE  120
GNSPFIREKV MEDGYNWRKY GQKLVKGNEF VRSYYRCTYP NCKAKKQLER SPGGQVVDTV  180
YFAEHDHPKP PTGAVSISQD KRSDVVTAVS KEKSSGSLVQ TPRQTEPPKV HRGLHISVTP  240
AADDVKTDIS QSSRIKGDNT HKDLSSPSSK RRKKGGNIEP SPVERPTSDS RNVVHTQTLF  300
DIVNDGYRWR KYGQKSVKGS PYPRSYYRCS SSGCPVKKHV ERSSQDTKLL ITTYEGKHDH  360
AMPPGRVVTH NNMVDSEVDD KEQNAKEGDA NKTPQSAALQ SITKDQHEED HPRKKIKTNG  420
FEKSLGQGPV LDEKVKEEIK DISDANKDHA ANHAKPETKS EDKIAACHEK AVGTLETEEQ  480
KPKTEPAQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-46130365176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013546m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006297523.10.0WRKY transcription factor 1
SwissprotQ9SI370.0WRKY1_ARATH; WRKY transcription factor 1
TrEMBLR0G4V60.0R0G4V6_9BRAS; Uncharacterized protein
STRINGXP_006297523.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.20.0zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]