PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10013119m
Common NameCARUB_v10012927mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Nin-like
Protein Properties Length: 685aa    MW: 76012.5 Da    PI: 4.9456
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10013119mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.72.3e-28614664252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  Carubv10013119m 614 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 664
                      799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.597603684IPR003035RWP-RK domain
PfamPF020421.6E-25617664IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MEDDAGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSG  60
SASTAMNDNS TFLCFGENPS QDNFSHEETE NNKSMNQEPF DQAEKFLLEE AEVGKSWWIA  120
PRASEGASSS VKERLLQAIS GLNEAVQDKD FLVQIWVPIQ QEGKSFLTTW AQPHLFNQEY  180
SSLAEYRHVS ETYNFPADEG LNDFVGLPGR VFLQKLPEWT PDVRFFRRDE YPRIKEAQKC  240
DVRGSLALPV FERGSGTCLG VVEIVTTTQK MNYRQELEKM CKALEAVDLR SSSNLNTPSS  300
EFLQVYSDFY CAALPEIKDF LATVCRLYDL PLALSWAPCA PQGKHGSRHS DDNFSQCVST  360
TDSACSVLDE QSKSFWEACS EHHLLQGEGI VGKAFKATKL FFVPEVTTFS KTNYPLAHHA  420
KISGLHAALA VPLKSKSGLV EFVLEFFFPK ACLDTEAQQE MLKSLSVTLQ QNFRSSNLVI  480
DKDLELEVVL PVRETMLFSE NPQSGAETTE TLTEIEMQES SWISHMIKAN EKGKGVSLSW  540
EYQKEDPKEL SSGRENTLID PSPNNVPLEA EQLQQASTSG LRVDSGPSTK SPSTGGGNML  600
GSRRPGDKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK  660
IKKVGHSLKK LQLVMDSVQV MSLP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10013119m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0909430.0AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296934.10.0protein NLP1
RefseqXP_023642545.10.0protein NLP1
SwissprotQ8H1110.0NLP1_ARATH; Protein NLP1
TrEMBLR0G3B00.0R0G3B0_9BRAS; Uncharacterized protein
STRINGXP_006296934.10.0(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17150.10.0Nin-like family protein
Publications ? help Back to Top
  1. Suzuki W,Konishi M,Yanagisawa S
    The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor.
    Plant Signal Behav, 2014.
    [PMID:24270631]