PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012927m

Common Name

CARUB_v10012927mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Nin-like

Protein Properties

Length: 918aa MW: 101591 Da PI: 4.7218

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012927m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.2	3.4e-28	614	664	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l+++F++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ Carubv10012927m 614 EKTIGLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKV 664 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-25	617	664	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.17E-22	809	902	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.4E-23	818	899	No hit	No description
PROSITE profile	PS51745	24.319	819	902	IPR000270	PB1 domain
SMART	SM00666	5.8E-24	819	902	IPR000270	PB1 domain
Pfam	PF00564	9.5E-16	820	901	IPR000270	PB1 domain
CDD	cd06407	2.70E-40	820	901	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MEDDAGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSG 60 SASTAMNDNS TFLCFGENPS QDNFSHEETE NNKSMNQEPF DQAEKFLLEE AEVGKSWWIA 120 PRASEGASSS VKERLLQAIS GLNEAVQDKD FLVQIWVPIQ QEGKSFLTTW AQPHLFNQEY 180 SSLAEYRHVS ETYNFPADEG LNDFVGLPGR VFLQKLPEWT PDVRFFRRDE YPRIKEAQKC 240 DVRGSLALPV FERGSGTCLG VVEIVTTTQK MNYRQELEKM CKALEAVDLR SSSNLNTPSS 300 EFLQVYSDFY CAALPEIKDF LATVCRLYDL PLALSWAPCA PQGKHGSRHS DDNFSQCVST 360 TDSACSVLDE QSKSFWEACS EHHLLQGEGI VGKAFKATKL FFVPEVTTFS KTNYPLAHHA 420 KISGLHAALA VPLKSKSGLV EFVLEFFFPK ACLDTEAQQE MLKSLSVTLQ QNFRSSNLVI 480 DKDLELEVVL PVRETMLFSE NPQSGAETTE TLTEIEMQES SWISHMIKAN EKGKGVSLSW 540 EYQKEDPKEL SSGRENTLID PSPNNVPLEA EQLQQASTSG LRVDSGPSTK SPSTGGGNML 600 GSRRPGDKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK 660 IKKVGHSLKK LQLVMDSVQG AEGSIQLDSF YTSFPELNSP NMSSNVPSLK SNEQSSHLKA 720 QSENDMAEEN TAPRSPSSSC SKSSGSSNNN ENTANVLVSE DANAALERDH SEAELHQVNQ 780 EETKFPARTQ SHNTFNEPPV LETSPLIPGS SNKSLRGGAI KVKATFGEAR IRFTLLPSSG 840 FRELQQDIAR RFNIDDISLF DLKYLDDDEE WVLLTCEADL EECIDIYRLT QTQTIRISLN 900 EAFQVKLGGS FGSTGPS*

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MEDDAGGDGG EGNGGFSPNS SFGAFPDTAM DLDFMDELLF DGCWLETTDS KSLKQTEQSG  60
SASTAMNDNS TFLCFGENPS QDNFSHEETE NNKSMNQEPF DQAEKFLLEE AEVGKSWWIA  120
PRASEGASSS VKERLLQAIS GLNEAVQDKD FLVQIWVPIQ QEGKSFLTTW AQPHLFNQEY  180
SSLAEYRHVS ETYNFPADEG LNDFVGLPGR VFLQKLPEWT PDVRFFRRDE YPRIKEAQKC  240
DVRGSLALPV FERGSGTCLG VVEIVTTTQK MNYRQELEKM CKALEAVDLR SSSNLNTPSS  300
EFLQVYSDFY CAALPEIKDF LATVCRLYDL PLALSWAPCA PQGKHGSRHS DDNFSQCVST  360
TDSACSVLDE QSKSFWEACS EHHLLQGEGI VGKAFKATKL FFVPEVTTFS KTNYPLAHHA  420
KISGLHAALA VPLKSKSGLV EFVLEFFFPK ACLDTEAQQE MLKSLSVTLQ QNFRSSNLVI  480
DKDLELEVVL PVRETMLFSE NPQSGAETTE TLTEIEMQES SWISHMIKAN EKGKGVSLSW  540
EYQKEDPKEL SSGRENTLID PSPNNVPLEA EQLQQASTSG LRVDSGPSTK SPSTGGGNML  600
GSRRPGDKRR TKTEKTIGLE VLRQHFAGSL KDAAKSIGVC PTTLKRICRQ HGIMRWPSRK  660
IKKVGHSLKK LQLVMDSVQG AEGSIQLDSF YTSFPELNSP NMSSNVPSLK SNEQSSHLKA  720
QSENDMAEEN TAPRSPSSSC SKSSGSSNNN ENTANVLVSE DANAALERDH SEAELHQVNQ  780
EETKFPARTQ SHNTFNEPPV LETSPLIPGS SNKSLRGGAI KVKATFGEAR IRFTLLPSSG  840
FRELQQDIAR RFNIDDISLF DLKYLDDDEE WVLLTCEADL EECIDIYRLT QTQTIRISLN  900
EAFQVKLGGS FGSTGPS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012927m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY090943	0.0	AY090943.1 Arabidopsis thaliana At2g17150 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296934.1	0.0	protein NLP1
Refseq	XP_023642545.1	0.0	protein NLP1
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	R0G2Z6	0.0	R0G2Z6_9BRAS; Uncharacterized protein
STRING	XP_006296934.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Carubv10012927m
Entrez Gene	17891481

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631]