PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10012879m

Common Name

CARUB_v10012879mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB_related

Protein Properties

Length: 1050aa MW: 117377 Da PI: 9.7831

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10012879m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.8	1e-07	44	76	3	36
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRt 36 WT E e+++da +++G + Wk++a+ + + R+ Carubv10012879m 44 QWTRVELERFYDAYRKHGHE-WKKVAAAVRNSRS 76 6*****************.***99886666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.81E-6	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-5	44	81	IPR001005	SANT/Myb domain
SMART	SM01135	2.5E-60	641	742	IPR033471	DIRP domain
Pfam	PF06584	3.9E-32	641	741	IPR033471	DIRP domain
SMART	SM00333	0.0014	728	785	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1050 aa Download sequence Send to blast
MAPVRKSRSV NKRFTNESSP GKDAGSSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH 60 GHEWKKVAAA VRNSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE 120 GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIKHGVASTD GCLTFLKQAR ANGTQRHATG 180 KRTPRVPVQN SYMRDDRECF TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES 240 PNRRTELNAS SPIKSWGNMS RTRKSQSKHC DNSVFEEWVG SSQERKLESD KDTALLGDME 300 GVSELEAARK GKRFYKKRVK VEVEEAEGNV SDDNGEACSA TEGLRIKSQR RKAAMEASRG 360 KYLSHSAKKR DNKLTSGDEF DALQALAELS ASMIPATLME SESSARLKEE RTEYNMDERS 420 STPEATPSSS NGEKANAEPD DDSLLHAISS GENANKRKPK PSRQASTDCD VVPTGKLQPQ 480 TSGSLRRKRI PKVLGDEAPA DVSQKKITNK KELSQDENNM KSLVRTKRVG QGPAQSKQLK 540 TAKTLDEFTT TSDKNRPEMD VVASTKQVSD SCPASVSQKP PNKRKKSLKK SLQERAKSSE 600 TIHKASRSSR SLSEQELLLK DKMSTALSYP LARRRCIFEW FYSAIDHPWF AKMEFVDYLN 660 HVGLGHIPRL TRLEWSVIKS SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE 720 GLPTDLARPL SVGNRVIAIH PKTREIHDGK ILTVDHNKCN VLFDDLGVEL VMDIDCMPLN 780 PLEYMPEGLR RQIDKCLSMK KEAQLSGNSN IGVSVIFPPC GLENVSFSMN PPLNQGDIIA 840 PILHGKVSTN TSSPQQTNHS YITTYNKARE AEIQRALALQ HASDEKEMEP EMLEIVKGSK 900 TRAQAMVDAA IKAASSVKEG EDANKMIQEA LDLIGKHQPL RGFRFKHHEH VNGNIEHHQN 960 PSPSDTSETM ANNDFNSQDG SDLITSCVAT WLMIQMCTER QYPPADVAQL IDAAITSLQP 1020 RCPQNLPIYR EIQTCMGQIK TQILALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1050 aa Download sequence Send to blast

MAPVRKSRSV NKRFTNESSP GKDAGSSRKN KQRKKKLSDK LGPQWTRVEL ERFYDAYRKH  60
GHEWKKVAAA VRNSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE  120
GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIKHGVASTD GCLTFLKQAR ANGTQRHATG  180
KRTPRVPVQN SYMRDDRECF TPPNKRARKQ FDANDDVAHF LALALTDASR RGGSSKVSES  240
PNRRTELNAS SPIKSWGNMS RTRKSQSKHC DNSVFEEWVG SSQERKLESD KDTALLGDME  300
GVSELEAARK GKRFYKKRVK VEVEEAEGNV SDDNGEACSA TEGLRIKSQR RKAAMEASRG  360
KYLSHSAKKR DNKLTSGDEF DALQALAELS ASMIPATLME SESSARLKEE RTEYNMDERS  420
STPEATPSSS NGEKANAEPD DDSLLHAISS GENANKRKPK PSRQASTDCD VVPTGKLQPQ  480
TSGSLRRKRI PKVLGDEAPA DVSQKKITNK KELSQDENNM KSLVRTKRVG QGPAQSKQLK  540
TAKTLDEFTT TSDKNRPEMD VVASTKQVSD SCPASVSQKP PNKRKKSLKK SLQERAKSSE  600
TIHKASRSSR SLSEQELLLK DKMSTALSYP LARRRCIFEW FYSAIDHPWF AKMEFVDYLN  660
HVGLGHIPRL TRLEWSVIKS SLGRPRRFSE RFLQEEREKL KQYRESVRKH YTELRTGARE  720
GLPTDLARPL SVGNRVIAIH PKTREIHDGK ILTVDHNKCN VLFDDLGVEL VMDIDCMPLN  780
PLEYMPEGLR RQIDKCLSMK KEAQLSGNSN IGVSVIFPPC GLENVSFSMN PPLNQGDIIA  840
PILHGKVSTN TSSPQQTNHS YITTYNKARE AEIQRALALQ HASDEKEMEP EMLEIVKGSK  900
TRAQAMVDAA IKAASSVKEG EDANKMIQEA LDLIGKHQPL RGFRFKHHEH VNGNIEHHQN  960
PSPSDTSETM ANNDFNSQDG SDLITSCVAT WLMIQMCTER QYPPADVAQL IDAAITSLQP  1020
RCPQNLPIYR EIQTCMGQIK TQILALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	QKRKRAKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10012879m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583496	0.0	AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296886.1	0.0	protein ALWAYS EARLY 2 isoform X1
Refseq	XP_006296887.1	0.0	protein ALWAYS EARLY 2 isoform X1
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	R0HJB2	0.0	R0HJB2_9BRAS; Uncharacterized protein
STRING	XP_006296886.1	0.0	(Capsella rubella)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-143	DNA binding

Link Out ? help Back to Top
Phytozome	Carubv10012879m
Entrez Gene	17893569

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]