PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012777m | ||||||||
Common Name | CARUB_v10001064mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | G2-like | ||||||||
Protein Properties | Length: 150aa MW: 17158.1 Da PI: 5.14 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.2 | 4.3e-14 | 21 | 48 | 1 | 28 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAt 28 k+r+rWtpeLHe+Fveav+qLGGse+ Carubv10012777m 21 KQRMRWTPELHEAFVEAVNQLGGSEREP 48 79**********************9854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.68E-6 | 19 | 52 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 19 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-8 | 21 | 49 | IPR006447 | Myb domain, plants |
Pfam | PF14379 | 6.5E-14 | 69 | 101 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MVLSEEQLSG RNSSSSVATS KQRMRWTPEL HEAFVEAVNQ LGGSEREPQE KKMTSMEDIK 60 SLDMKTSVEF TQALRLQMEV QKRLHEQLEI QRTLQLQIEK QIQENKSSSP EELPKQCNTT 120 SAEVEYGLET RTDNRTESAS ASRKRVRED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012777m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 3e-66 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 3e-66 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 3e-66 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023636842.1 | 1e-82 | protein PHR1-LIKE 1 isoform X2 | ||||
Refseq | XP_023636843.1 | 9e-83 | protein PHR1-LIKE 1 isoform X3 | ||||
Refseq | XP_023636844.1 | 4e-83 | protein PHR1-LIKE 1 isoform X4 | ||||
Refseq | XP_023636845.1 | 4e-83 | protein PHR1-LIKE 1 isoform X4 | ||||
Swissprot | Q8GUN5 | 1e-73 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | R0H799 | 3e-81 | R0H799_9BRAS; Uncharacterized protein | ||||
STRING | XP_006287842.1 | 6e-82 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 2e-76 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012777m |
Entrez Gene | 17883081 |
Publications ? help Back to Top | |||
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