PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012735m | ||||||||
Common Name | CARUB_v10002458mg, CARUB_v10012735mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 14392.7 Da PI: 9.9681 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.5 | 9.9e-13 | 14 | 103 | 3 | 83 |
EE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 k+l+ d k+grl lp++ ++ g+k ++++l + d ++++s+ v+l+ r++s+ y+l++GWk++ k+ gLkegD + ++ Carubv10012735m 14 KALSDTDFDKHGRLQLPNSQIQLVltkmkdetkkGLK--KGIKLEVLDiTKNNSYFVTLKSRNSSRDYYLETGWKNMRKSLGLKEGDNIKLY 103 788899999***********96669988877764444..77899999977889******99**************************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.2E-12 | 10 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.43E-15 | 11 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-10 | 11 | 116 | No hit | No description |
SMART | SM01019 | 9.5E-10 | 12 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-9 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEDFRINGDM IISKALSDTD FDKHGRLQLP NSQIQLVLTK MKDETKKGLK KGIKLEVLDI 60 TKNNSYFVTL KSRNSSRDYY LETGWKNMRK SLGLKEGDNI KLYWDYLNYK FIILNFQYSL 120 IP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012735m |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_179783.1 | 4e-49 | F-box associated ubiquitination effector family protein | ||||
Refseq | XP_006296022.1 | 5e-51 | putative B3 domain-containing protein At2g21920 | ||||
Swissprot | Q9SJ07 | 4e-50 | Y2192_ARATH; Putative B3 domain-containing protein At2g21920 | ||||
TrEMBL | R0ETA4 | 2e-82 | R0ETA4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279083.1 | 3e-83 | (Capsella rubella) | ||||
STRING | XP_006289061.1 | 3e-83 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15428 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 4e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012735m |
Entrez Gene | 17874215 | 17881215 |