PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012730m | ||||||||
Common Name | CARUB_v10012730mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25343.2 Da PI: 7.5421 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 83 | 105 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k Fs++ L H++ H Carubv10012730m 83 FACTFCKKEFSTSQALGGHQNAH 105 78******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.6E-5 | 79 | 109 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.62E-6 | 80 | 110 | No hit | No description |
Pfam | PF13912 | 5.8E-6 | 82 | 107 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.655 | 83 | 110 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 105 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MELNLSTPTS CSSSSISSSS HHEIIPSTTK GRKMKEKVSA AEPPMETTPR LEFRFLFDES 60 IRNSGFGDEA QEGTRAEPKA RVFACTFCKK EFSTSQALGG HQNAHKQERS LAKRRKEIEV 120 NYPGLSSFYS NQYPPPSGVS YNGSSSHYDL GVRYNPNIAK TSKPYPFNIF RCRLGYRGLN 180 IPLLSHLSVP KSDDLSTNLI ANLEGSINED IKDDQPDTDS DIDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012730m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006279345.1 | 1e-169 | zinc finger protein 4 | ||||
TrEMBL | R0GM17 | 1e-167 | R0GM17_9BRAS; Uncharacterized protein | ||||
STRING | XP_006279345.1 | 1e-168 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8738 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 1e-84 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012730m |
Entrez Gene | 17874459 |