PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012547m | ||||||||
Common Name | CARUB_v10012547mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 14010.6 Da PI: 3.8794 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.8e-17 | 4 | 78 | 18 | 98 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +p f e+ + + ++t+ l d sgrsW+v++ +k ++ ++lt GW++Fvk+n+L++g + F +d +++f +v +f Carubv10012547m 4 IPLGFN-EYFPD-PLPITVDLLDYSGRSWTVRM--KKIGENVFLTLGWENFVKDNNLEDGKYLNFIYDCDRTF--YVIIFA 78 777776.55323.4899****************..*******************************9987776..887775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.3E-10 | 1 | 80 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.383 | 1 | 80 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.14E-21 | 2 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.3E-15 | 3 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-18 | 3 | 82 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVAIPLGFNE YFPDPLPITV DLLDYSGRSW TVRMKKIGEN VFLTLGWENF VKDNNLEDGK 60 YLNFIYDCDR TFYVIIFAHD MCSEFRGFPQ VIVDVDDYET CEDEDEDVEE AQQQKENNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-47 | 2 | 82 | 24 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012547m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632724.1 | 1e-83 | B3 domain-containing protein At1g16640 | ||||
Swissprot | Q9FX77 | 2e-54 | Y1664_ARATH; B3 domain-containing protein At1g16640 | ||||
TrEMBL | R0GU12 | 6e-83 | R0GU12_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306524.1 | 1e-83 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15751 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16640.1 | 2e-55 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012547m |
Entrez Gene | 17900120 |
Publications ? help Back to Top | |||
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