PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012451m | ||||||||
Common Name | CARUB_v10012451mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | MYB | ||||||||
Protein Properties | Length: 200aa MW: 22799.7 Da PI: 8.4834 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+d+++ +G g+W++ ++ g+ R++k+c++rw +yl Carubv10012451m 14 KGAWTKEEDQCLIDYIRNHGEGSWRSLPNSAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T Ed++++++++++G++ W++Ia +++ gRt++++k++w+++ Carubv10012451m 67 RGNFTDGEDQIIIKLHNLFGNK-WSLIAGKLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.01 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.52E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.886 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.17E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDQCLIDYIR NHGEGSWRSL PNSAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TDGEDQIIIK LHNLFGNKWS LIAGKLPGRT DNEIKNYWNT HIKRKLLSRG 120 IDPKTHRSIV EPNTTPFNSL ARDVKSTCPD HVKPKTYTLS ENCATTSGTT TDEDLWLSVD 180 RDFSYDFGDK ELNLELTLGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-29 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. {ECO:0000250|UniProtKB:Q38850}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012451m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303828.2 | 1e-147 | transcription factor MYB8 | ||||
Swissprot | Q9SDS8 | 1e-117 | MYB8_ARATH; Transcription factor MYB8 | ||||
TrEMBL | R0GLS9 | 1e-146 | R0GLS9_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006303828.1 | 1e-147 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35515.1 | 1e-119 | high response to osmotic stress 10 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012451m |
Entrez Gene | 17900670 |
Publications ? help Back to Top | |||
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