PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012182m
Common NameCARUB_v10012182mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 445aa    MW: 50506.4 Da    PI: 7.8728
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012182mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-12265306854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RRdriN+a+  Lr ++Pk      +K++K+ i + Av+YI++L
  Carubv10012182m 265 SERKRRDRINQAMYALRAVVPKI-----TKMNKIGIFTDAVDYINEL 306
                      6*********************7.....7***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.3E-1411146IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.68E-11255311No hitNo description
SuperFamilySSF474591.01E-14255319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964257306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13260322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9264306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MMMRAGERVK EFLRPFVDSK TWDLCVIWKL GDDPSRFIEW VGCCCSGSYV DKNIKLENSE  60
GTAREKKGSF CRDEHNKHHM RTLACEALSH FPLFMPLYPG IHGEVVMSKS PKWLVNSGPG  120
LKKDMFNTRV LVPVSDGLIE LFSFKMKPFD GPMVDMIISR CNAFFEPFPE EKLQIRIIPR  180
AEESISSGVN LSFEGGGSSS VSNHSSETQN LFGNQPNARC VEIFREEQAP CLVMNKEDPV  240
VQKAVDFKAN KRLPKENFKS KNLLSERKRR DRINQAMYAL RAVVPKITKM NKIGIFTDAV  300
DYINELLVEK KKLEDELKGI NEKECKEIAA EEESAIADPE AEKRASKLNK KMKKNEVNLE  360
VHEIGERDFL IRVVQEHKRD GFKRLIEAVD SCGLEIIDVN FTRLDLTVKT VLNVKADKDG  420
IASGDLRDSL LKIMINQTID MKSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265270ERKRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012182m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293750.0AK229375.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor bHLH090, complete cds, clone: RAFL16-62-E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306313.10.0transcription factor bHLH90
SwissprotQ0WNR20.0BH090_ARATH; Transcription factor bHLH90
TrEMBLR0GTT20.0R0GTT2_9BRAS; Uncharacterized protein
STRINGXP_006306313.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69852742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.10.0bHLH family protein