PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012164m
Common NameCARUB_v10012164mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 306aa    MW: 33476.2 Da    PI: 6.5091
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012164mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1758107255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Carubv10012164m  58 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAEEAACAYDCAARAMRG 107
                      59*******.**********73....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.5E-1158107IPR001471AP2/ERF domain
SMARTSM003809.9E-3358121IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2158115IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-2958114IPR001471AP2/ERF domain
PROSITE profilePS5103221.91858115IPR001471AP2/ERF domain
CDDcd000189.19E-3058114No hitNo description
PRINTSPR003671.5E-95970IPR001471AP2/ERF domain
PRINTSPR003671.5E-98197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEEAIMRLEG AEHREANNNS LKRKPSRSPS STAPSSPGGV TTSKPAAGTG ASGGSTIRYR  60
GVRRRPWGRY AAEIRDPLSK ERRWLGTFDT AEEAACAYDC AARAMRGLKA RTNFVYPMPS  120
LDSYHHRIFS PPPMNMFLLR DVLNAQSLSP FNTFAYPPCN LSNANDAVHE SFTNVNDVSE  180
DLSPKAKRSS TADNESLISI FEPEPAGSGL LQEVVESFLP KPSSHHASTF PKCNQPSVGV  240
FPTMPETGFQ TDLGLPNVHV EGNGFGEVKY HGELGWADHE SGFDSATMQY NGNVGMLYQY  300
CFHDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1948114771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012164m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0001030.0AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence.
GenBankAY5608890.0AY560889.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g24590) mRNA, complete cds.
GenBankBT0260730.0BT026073.1 Arabidopsis thaliana At1g24590 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306298.10.0ethylene-responsive transcription factor ESR2
SwissprotQ9FYK50.0ESR2_ARATH; Ethylene-responsive transcription factor ESR2
TrEMBLR0GTR40.0R0GTR4_9BRAS; Uncharacterized protein
STRINGCagra.2231s0001.1.p0.0(Capsella grandiflora)
STRINGXP_006306298.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-147DORNROSCHEN-like
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Thoma R,Chandler JW
    Polarity in the early floral meristem of Arabidopsis.
    Plant Signal Behav, 2015. 10(4): p. e992733
    [PMID:25806573]
  3. Comelli P,Glowa D,Chandler JW,Werr W
    Founder-cell-specific transcription of the DORNRÖSCHEN-LIKE promoter and integration of the auxin response.
    J. Exp. Bot., 2016. 67(1): p. 143-55
    [PMID:26428063]
  4. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  5. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  6. Durán-Medina Y,Serwatowska J,Reyes-Olalde JI,de Folter S,Marsch-Martínez N
    The AP2/ERF Transcription Factor DRNL Modulates Gynoecium Development and Affects Its Response to Cytokinin.
    Front Plant Sci, 2017. 8: p. 1841
    [PMID:29123539]