PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10012162m | ||||||||
Common Name | CARUB_v10012162mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 836aa MW: 91605 Da PI: 6.368 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Carubv10012162m 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP | |||||||
2 | START | 169.1 | 3e-53 | 160 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+++d++ W + ++++++++v+ ++ g+++l Carubv10012162m 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTVEL 252 7899******************************************************.7777777777****************9999***** PP EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183 +++l+a+++l+p Rdf+ +Ry+ l++g++v++++S+ s+q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+ Carubv10012162m 253 LYMQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRP 346 *********************************************999999******************************************* PP HHHHHHHHHHHHHHHHTXXXXX CS START 184 lvksglaegaktwvatlqrqce 205 l++s + ++kt++a+l+++++ Carubv10012162m 347 LYESPKVLAQKTTMAALRQLKQ 368 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.2E-15 | 13 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-17 | 15 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.26E-17 | 16 | 76 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 17 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.273 | 19 | 75 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.31E-6 | 68 | 107 | No hit | No description |
PROSITE profile | PS50848 | 25.535 | 150 | 378 | IPR002913 | START domain |
CDD | cd08875 | 9.06E-73 | 154 | 370 | No hit | No description |
SMART | SM00234 | 1.6E-37 | 159 | 369 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.3E-20 | 159 | 345 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 3.85E-36 | 159 | 371 | No hit | No description |
Pfam | PF01852 | 8.9E-51 | 160 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 4.3E-52 | 692 | 834 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence Send to blast |
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT 120 PNPSLPAKDT SCESVVTSGQ HQLASQNPQR DASPAGLLSI AEETLAEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN 240 VLPTANGGTV ELLYMQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP 300 LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM 360 AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM 420 DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW 480 ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV 540 PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR 600 TLDLASALEI GSAGTKASSD QSGSSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII 660 SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLARWICQS YRGYMGVELL KSNSEGNESI 720 LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVSL QDISLEKIFD DNGRKTLCSE 780 FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKVLNEEE NAHCICFVFI NWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10012162m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ439449 | 0.0 | AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene). | |||
GenBank | AY060556 | 0.0 | AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306297.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | R0IKW4 | 0.0 | R0IKW4_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306297.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10012162m |
Entrez Gene | 17900065 |
Publications ? help Back to Top | |||
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