PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012147m
Common NameCARUB_v10012147mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 217aa    MW: 23789.7 Da    PI: 5.4435
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012147mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-163483155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++ tae+Aa+a++ a+ +l+g
  Carubv10012147m 34 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPTAEMAAAAYDVAAMALKG 83
                     68****9.55.6*********843...5***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.8E-103483IPR001471AP2/ERF domain
PROSITE profilePS5103220.2713591IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-183593IPR016177DNA-binding domain
SMARTSM003804.9E-293597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-273593IPR001471AP2/ERF domain
CDDcd000182.27E-183693No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MYPNFTLSFR YYTLPNSTNN SMSSAGLASR KKDPVYRGIR CRSGKWVSEI REPRKTTRIW  60
LGTYPTAEMA AAAYDVAAMA LKGREAVLNF PESAMSYPVP VSTSAADIRT AAAAAASVKG  120
CTEYGEEVEK ESKKKKKKKT SSSSLKSRAS ECHVDNDVAS SSWCGTEFMD EDEVLNMPNL  180
LANMAEGMML APPSWMDSRP SDDSPENSND EDLWGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-132292173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00138DAPTransfer from AT1G12630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012147m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633148.11e-141ethylene-responsive transcription factor ERF027
SwissprotQ38Q395e-85ERF27_ARATH; Ethylene-responsive transcription factor ERF027
TrEMBLR0IKU51e-157R0IKU5_9BRAS; Uncharacterized protein
STRINGXP_006304750.11e-158(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19572777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12630.11e-65ERF family protein