PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10012013m
Common NameCARUB_v10012013mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 306aa    MW: 34450.9 Da    PI: 6.8178
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10012013mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05103122120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k+F+r  n++ H+
  Carubv10012013m 103 FSCSVCNKTFNRFNNMQMHM 122
                      89*****************9 PP
2zf-C2H210.90.0014188211123
                      EEET.TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                      ++C  +C k+F  + + ++H +++
  Carubv10012013m 188 FRCRkKCEKTFAVRGDWRTHEKNC 211
                      89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.66E-599124No hitNo description
Gene3DG3DSA:3.30.160.609.8E-6103122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4174209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MYNNNQYCIS GDEDSVVLSL GPPGHQYSTS HNKAASTKPS SNHEFNLPST NPSGVTVALH  60
IGPPNSDKET LAGGNNQEAG LTARQGQYWI PSLSQILVGP TQFSCSVCNK TFNRFNNMQM  120
HMWGHGSQYR KGPESLRGTK SSSSILRLPC YCCAEGCKNN IDHPRSKPLK DFRTLQTHYK  180
RKHGAKPFRC RKKCEKTFAV RGDWRTHEKN CGKLWFCVCG SDFKHKRSLK DHVRAFGDGH  240
AAHTIGDRVV SIGDAEEDDE EEEEEEEDDD EEEEEAHEEN VRGEKNYGIS YEHFRRYGQI  300
SGDNY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10012013m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304718.10.0zinc finger protein WIP6
SwissprotQ9FX680.0ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLR0GPB20.0R0GPB2_9BRAS; Uncharacterized protein
STRINGXP_006304718.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.10.0C2H2-like zinc finger protein