PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011882m | ||||||||
Common Name | CARUB_v10011882mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 80610.8 Da PI: 7.6993 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.2 | 2.2e-16 | 32 | 82 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++q+ Le++F + +p+ ++r +LA++l+++ +q+k+WFqN+R + k Carubv10011882m 32 HHSHHQTLSLEQYFTEREHPNSAQRHQLAEELNMKPEQIKFWFQNKRVQTK 82 5799*******************************************9887 PP | |||||||
2 | START | 119.4 | 5.1e-38 | 236 | 456 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ae a +e+++++ +ep+Wvks+ + n+ k ++ k+ ++ e +++++vv+m++++lv l+d+ +W + ++ +a+t+ Carubv10011882m 236 AENAVAEVMSLIRMDEPMWVKSPidgrfvlDPVNYGSIFGKMSQFKTtsvCPRESSKEVVVVPMDATNLVDMLFDTE-KWARLFPtivnEAKTV 328 788999******************99999977788877777755555777***************************.9999999999999999 PP EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 v+++ ++ +++ +l +lsplvp R+f+++R+++++++ w+i+dvS +++ +s+v ++++pSg li+ ++ g skvtw+ehv Carubv10011882m 329 HVLETInrrrpTFSRVIYENLHMLSPLVPpREFLILRTCQKMEDNLWLIADVSCHHRNIDY-DSPV--CTKRPSGVLIQGLAHGCSKVTWIEHV 419 998887788**9********************************************99987.4444..689*********************** PP E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ +l h l+r l++s+ ga++w+ tl+r ce+ Carubv10011882m 420 EVSNNLQpHRLYRDLLNSCFGYGARRWTVTLERMCER 456 ***99855***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-15 | 13 | 84 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.0E-14 | 20 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.078 | 24 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.4E-10 | 26 | 88 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.3E-14 | 32 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.33E-10 | 41 | 82 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 41.315 | 225 | 459 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.87E-29 | 228 | 457 | No hit | No description |
CDD | cd08875 | 5.49E-80 | 229 | 455 | No hit | No description |
SMART | SM00234 | 2.9E-21 | 234 | 456 | IPR002913 | START domain |
Pfam | PF01852 | 6.9E-32 | 236 | 456 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.7E-9 | 292 | 422 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.84E-8 | 480 | 697 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MYSSSREDSS ANERETSSGD TNANQEGSNH QHHSHHQTLS LEQYFTEREH PNSAQRHQLA 60 EELNMKPEQI KFWFQNKRVQ TKMNNEKAEN AELRIDNLTL QCENEAMEQA MKTVVCPPCG 120 GRNPGREEQL CHLENLRSEN TFLQREHERL SSYVTQHRGS RLSIHGPSTY GSTSRTRPTP 180 YGSSSNHRPK QSSLLRGPYA RENINITPVP KPRKLVQLQH FQPMSRQEKA EMIETAENAV 240 AEVMSLIRMD EPMWVKSPID GRFVLDPVNY GSIFGKMSQF KTTSVCPRES SKEVVVVPMD 300 ATNLVDMLFD TEKWARLFPT IVNEAKTVHV LETINRRRPT FSRVIYENLH MLSPLVPPRE 360 FLILRTCQKM EDNLWLIADV SCHHRNIDYD SPVCTKRPSG VLIQGLAHGC SKVTWIEHVE 420 VSNNLQPHRL YRDLLNSCFG YGARRWTVTL ERMCERLSLY SMHEVPAADY VGVVRTIHGR 480 RSIMNLGERM LKNFAWIMKM ATKLDFSRPS DADNSKIRIS VRTNTQAGQP VGLIVCASSS 540 LSLPVPPVQV YNLLKNLEVR NQWDVLCHGN PVIEATRFVT GLKKKNNVTF LQTSSEGDNT 600 EMMILQDSFI DELGGMVVYA PMDLKTAYAA ISGDVDPSTI PILPSGFIIS RDSRSFPGEQ 660 DGRCMTLLTL AFQILVSGSI SSTELNLGDA TTTVETLINC TVQRVKAMLN CG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011882m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303739.1 | 0.0 | homeobox-leucine zipper protein HDG10 | ||||
Swissprot | Q9S9Z0 | 0.0 | HDG10_ARATH; Homeobox-leucine zipper protein HDG10 | ||||
TrEMBL | R0GL00 | 0.0 | R0GL00_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303739.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8468 | 15 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34650.1 | 0.0 | homeodomain GLABROUS 10 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011882m |
Entrez Gene | 17899349 |
Publications ? help Back to Top | |||
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