PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011882m
Common NameCARUB_v10011882mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 713aa    MW: 80610.8 Da    PI: 7.6993
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011882mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.2e-163282656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      ++++q+  Le++F +  +p+ ++r +LA++l+++ +q+k+WFqN+R + k
  Carubv10011882m 32 HHSHHQTLSLEQYFTEREHPNSAQRHQLAEELNMKPEQIKFWFQNKRVQTK 82
                     5799*******************************************9887 PP

2START119.45.1e-382364563206
                      HHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
            START   3 aeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                      ae a +e+++++  +ep+Wvks+       +  n+     k ++ k+   ++ e +++++vv+m++++lv  l+d+  +W + ++    +a+t+
  Carubv10011882m 236 AENAVAEVMSLIRMDEPMWVKSPidgrfvlDPVNYGSIFGKMSQFKTtsvCPRESSKEVVVVPMDATNLVDMLFDTE-KWARLFPtivnEAKTV 328
                      788999******************99999977788877777755555777***************************.9999999999999999 PP

                      EEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  83 evissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                       v+++      ++  +++ +l +lsplvp R+f+++R+++++++  w+i+dvS  +++    +s+v  ++++pSg li+ ++ g skvtw+ehv
  Carubv10011882m 329 HVLETInrrrpTFSRVIYENLHMLSPLVPpREFLILRTCQKMEDNLWLIADVSCHHRNIDY-DSPV--CTKRPSGVLIQGLAHGCSKVTWIEHV 419
                      998887788**9********************************************99987.4444..689*********************** PP

                      E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                      +++ +l  h l+r l++s+   ga++w+ tl+r ce+
  Carubv10011882m 420 EVSNNLQpHRLYRDLLNSCFGYGARRWTVTLERMCER 456
                      ***99855***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-151384IPR009057Homeodomain-like
SuperFamilySSF466891.0E-142082IPR009057Homeodomain-like
PROSITE profilePS5007115.0782484IPR001356Homeobox domain
SMARTSM003894.4E-102688IPR001356Homeobox domain
PfamPF000469.3E-143282IPR001356Homeobox domain
CDDcd000862.33E-104182No hitNo description
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PROSITE profilePS5084841.315225459IPR002913START domain
SuperFamilySSF559616.87E-29228457No hitNo description
CDDcd088755.49E-80229455No hitNo description
SMARTSM002342.9E-21234456IPR002913START domain
PfamPF018526.9E-32236456IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-9292422IPR023393START-like domain
SuperFamilySSF559612.84E-8480697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MYSSSREDSS ANERETSSGD TNANQEGSNH QHHSHHQTLS LEQYFTEREH PNSAQRHQLA  60
EELNMKPEQI KFWFQNKRVQ TKMNNEKAEN AELRIDNLTL QCENEAMEQA MKTVVCPPCG  120
GRNPGREEQL CHLENLRSEN TFLQREHERL SSYVTQHRGS RLSIHGPSTY GSTSRTRPTP  180
YGSSSNHRPK QSSLLRGPYA RENINITPVP KPRKLVQLQH FQPMSRQEKA EMIETAENAV  240
AEVMSLIRMD EPMWVKSPID GRFVLDPVNY GSIFGKMSQF KTTSVCPRES SKEVVVVPMD  300
ATNLVDMLFD TEKWARLFPT IVNEAKTVHV LETINRRRPT FSRVIYENLH MLSPLVPPRE  360
FLILRTCQKM EDNLWLIADV SCHHRNIDYD SPVCTKRPSG VLIQGLAHGC SKVTWIEHVE  420
VSNNLQPHRL YRDLLNSCFG YGARRWTVTL ERMCERLSLY SMHEVPAADY VGVVRTIHGR  480
RSIMNLGERM LKNFAWIMKM ATKLDFSRPS DADNSKIRIS VRTNTQAGQP VGLIVCASSS  540
LSLPVPPVQV YNLLKNLEVR NQWDVLCHGN PVIEATRFVT GLKKKNNVTF LQTSSEGDNT  600
EMMILQDSFI DELGGMVVYA PMDLKTAYAA ISGDVDPSTI PILPSGFIIS RDSRSFPGEQ  660
DGRCMTLLTL AFQILVSGSI SSTELNLGDA TTTVETLINC TVQRVKAMLN CG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011882m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303739.10.0homeobox-leucine zipper protein HDG10
SwissprotQ9S9Z00.0HDG10_ARATH; Homeobox-leucine zipper protein HDG10
TrEMBLR0GL000.0R0GL00_9BRAS; Uncharacterized protein
STRINGXP_006303739.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84681531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34650.10.0homeodomain GLABROUS 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]