PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011715m | ||||||||
Common Name | CARUB_v10011715mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20767.8 Da PI: 4.3596 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 17 | 65 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++k +g+Wv+eIr+p gk++r++lg++ tae+Aa+a++ a+++l+g Carubv10011715m 17 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAALYLRG 65 9****998.**********8...557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.077 | 16 | 73 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-37 | 16 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 16 | 74 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-14 | 16 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-22 | 17 | 74 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.6E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.37E-23 | 17 | 75 | No hit | No description |
PRINTS | PR00367 | 2.6E-10 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MENSYVSQRE NSDQVSYRGV RRRKWGKWVS EIREPGKKTR IWLGSYETAE MAAAAYDSAA 60 LYLRGSETHL NFPELADSFP QPASSSSKHV QAAAQEAALM FKLPGGSSNE PTQESGQGLS 120 RVGLSPDEIQ AINEFPLDSP RLGWMQDLEV NDYEELYGQY FGQYDRDDFY EIQQQQSIWD 180 FM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-18 | 17 | 78 | 6 | 68 | ATERF1 |
3gcc_A | 9e-18 | 17 | 78 | 6 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011715m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006306164.1 | 1e-133 | ethylene-responsive transcription factor ERF022 | ||||
Swissprot | Q9LQ28 | 4e-92 | ERF22_ARATH; Ethylene-responsive transcription factor ERF022 | ||||
TrEMBL | R0GT16 | 1e-131 | R0GT16_9BRAS; Uncharacterized protein | ||||
STRING | XP_006306164.1 | 1e-132 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33760.1 | 5e-93 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011715m |
Entrez Gene | 17897122 |