PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011715m
Common NameCARUB_v10011715mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 183aa    MW: 20767.8 Da    PI: 4.3596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011715mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.96.8e-201765355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a+++l+g
  Carubv10011715m 17 YRGVRRRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSAALYLRG 65
                     9****998.**********8...557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.0771673IPR001471AP2/ERF domain
SMARTSM003807.3E-371679IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-311674IPR001471AP2/ERF domain
PfamPF008475.5E-141665IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-221774IPR016177DNA-binding domain
PRINTSPR003672.6E-101728IPR001471AP2/ERF domain
CDDcd000183.37E-231775No hitNo description
PRINTSPR003672.6E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MENSYVSQRE NSDQVSYRGV RRRKWGKWVS EIREPGKKTR IWLGSYETAE MAAAAYDSAA  60
LYLRGSETHL NFPELADSFP QPASSSSKHV QAAAQEAALM FKLPGGSSNE PTQESGQGLS  120
RVGLSPDEIQ AINEFPLDSP RLGWMQDLEV NDYEELYGQY FGQYDRDDFY EIQQQQSIWD  180
FM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-181778668ATERF1
3gcc_A9e-181778668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011715m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306164.11e-133ethylene-responsive transcription factor ERF022
SwissprotQ9LQ284e-92ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLR0GT161e-131R0GT16_9BRAS; Uncharacterized protein
STRINGXP_006306164.11e-132(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.15e-93ERF family protein