PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011676m
Common NameCARUB_v10011676mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 169aa    MW: 18706.9 Da    PI: 10.1442
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011676mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-171968255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr +  +gr++AeIrd ++    + r++lg+++t+e+Aa+a+++ + +++g
  Carubv10011676m 19 RYRGVRKRQ-WGRYAAEIRDpFK----KSRVWLGTYDTPEDAARAYDKRAIEFRG 68
                     69****888.**********662....5********************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-291975No hitNo description
PfamPF008476.7E-111968IPR001471AP2/ERF domain
PROSITE profilePS5103222.7341976IPR001471AP2/ERF domain
SMARTSM003807.4E-321982IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-211977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-291976IPR001471AP2/ERF domain
PRINTSPR003673.6E-102031IPR001471AP2/ERF domain
PRINTSPR003673.6E-104258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAPAVKTAVV KTNEGNGVRY RGVRKRQWGR YAAEIRDPFK KSRVWLGTYD TPEDAARAYD  60
KRAIEFRGAK AKTNFTYYNT TNETLSLSQS HSTVESSVHG LNNNNLGSDA ISSRFPFPKI  120
QVKSGMMVFD DRSESESSSV VMDRSPQGGG RGRVVLDLDL NFPPPPEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-181775362ATERF1
3gcc_A3e-181775362ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00164DAPTransfer from AT1G28370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011676m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558824e-87AB055882.1 Arabidopsis thaliana AtERF11 gene for ERF domain protein11, complete cds.
GenBankAC0101554e-87AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAF3602324e-87AF360232.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0400324e-87AY040032.1 Arabidopsis thaliana putative ethylene-responsive element binding factor (At1g28370) mRNA, complete cds.
GenBankAY0867834e-87AY086783.1 Arabidopsis thaliana clone 27635 mRNA, complete sequence.
GenBankCP0026844e-87CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304607.11e-122ethylene-responsive transcription factor 11
SwissprotQ9C5I32e-74ERF76_ARATH; Ethylene-responsive transcription factor 11
TrEMBLR0IGP41e-121R0IGP4_9BRAS; Uncharacterized protein
STRINGXP_006304607.11e-122(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.16e-68ERF domain protein 11
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dubois M, et al.
    The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis.
    Plant Physiol., 2015. 169(1): p. 166-79
    [PMID:25995327]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Zhou X, et al.
    The ERF11 Transcription Factor Promotes Internode Elongation by Activating Gibberellin Biosynthesis and Signaling.
    Plant Physiol., 2016. 171(4): p. 2760-70
    [PMID:27255484]