PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011507m
Common NameCARUB_v10011507mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Dof
Protein Properties Length: 261aa    MW: 29429.1 Da    PI: 4.5131
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011507mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.33e-373793561
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     a +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rk+ +s
  Carubv10011507m 37 APPCPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRKRSRS 93
                     668**************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-261892IPR003851Zinc finger, Dof-type
PfamPF027011.3E-313892IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5283892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MLPYIGHNSY QQHQFSSPEM EISEKWKLSY GQEATAAPPC PRCASSNTKF CYYNNYSLSQ  60
PRYFCKGCRR YWTKGGSLRN IPVGGGCRKR SRSRQNSHKR FGRNENRPDG LLNQDDGIQS  120
TPAGSDIDLA AVFAQYVTDR SPSSTDNTTG SDQDSPVTTT TNALDSLSWD ICQETDVDLG  180
FYGEFSHLSQ KTEEDQRGFG QFLQEDREEI FEFQGLLDDK EIQEILECSF SEEPDQLISQ  240
GSFMINGDNW SSTDLTRFGI *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893KRSRSR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011507m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0154470.0AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ4462680.0DQ446268.1 Arabidopsis thaliana clone pENTR221-At1g21340 Dof-type zinc finger domain-containing protein (At1g21340) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306088.20.0dof zinc finger protein DOF1.2
SwissprotP683490.0DOF12_ARATH; Dof zinc finger protein DOF1.2
TrEMBLR0GT630.0R0GT63_9BRAS; Uncharacterized protein
STRINGCagra.1632s0025.1.p0.0(Capsella grandiflora)
STRINGXP_006306088.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64622643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.10.0Dof family protein