PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011479m
Common NameCARUB_v10011479mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family C2H2
Protein Properties Length: 174aa    MW: 19738.4 Da    PI: 9.4935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011479mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.52.7e-06830223
                     EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                     +C+ C+++F ++ +L +Hi+  H
  Carubv10011479m  8 ECGVCKRVFVSPQHLISHINAfH 30
                     6******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.556735IPR007087Zinc finger, C2H2
PROSITE patternPS000280930IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLYSTHQECG VCKRVFVSPQ HLISHINAFH SNRRVPPTFS SPAAAAPTNF RYHPNVNQNR  60
NPNPGFQGRT HMDYYRRGYL DDEGKFHKGF PPAPAMSRSM TPPARKCKYL MPRTPKISKM  120
PKLMDLFPEE TSSECLRTLP LLCQLEQRRD QEDTVETESS GANSSSIDLS LRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011479m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304014.11e-128uncharacterized protein LOC17900332
TrEMBLR0GLU41e-126R0GLU4_9BRAS; Uncharacterized protein
STRINGXP_006304014.11e-127(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.17e-54C2H2-like zinc finger protein