PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011378m

Common Name

CARUB_v10011378mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

Dof

Protein Properties

Length: 338aa MW: 36189.9 Da PI: 9.7462

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011378m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	79	137	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + lkcprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvPvGgg+rkn+k+ Carubv10011378m 79 DGPLKCPRCDSSNTKFCYYNNYNLTQPRHFCKGCRRYWTKGGALRNVPVGGGCRKNNKK 137 56789***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	64	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-32	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.627	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003002	Biological Process	regionalization
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009611	Biological Process	response to wounding
GO:0009625	Biological Process	response to insect
GO:0009753	Biological Process	response to jasmonic acid
GO:0010439	Biological Process	regulation of glucosinolate biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAFSSNWSQP TNSNHHHQHQ LHENGSIVGG HGLLSHQLPP LQANPNPNHH HVAASAGLPA 60 RMGGSMAERA RQAKIPPPDG PLKCPRCDSS NTKFCYYNNY NLTQPRHFCK GCRRYWTKGG 120 ALRNVPVGGG CRKNNKKGKN GNSKSSSSSS KQSSGVNAPS PSSGQLRTNH QFPFSPTLYN 180 LTHLGGIGLN LAATNGNNQA HQIGSSLMND LGFLHVGNGR NTSGQITGNI HDNNNNNENN 240 LMTSVGSLSH FTLFDPTTGL YPFPNEGNIG NNVGISCSST SMVDSRAYQT PPVKMEEQPN 300 QLANLSRPAS GLTSPGNQTN QYFWPSSDFS GPSNELL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements (By similarity). Involved in the regulation of root development (PubMed:23057675). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). Element of a regulatory network controlling indole glucosinolates (IGS) biosynthesis, probably by inducing the expression of accurate genes (e.g. CYP83B1). Promotes apical dominance (PubMed:16740150). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:16740150, ECO:0000269\|PubMed:23057675, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10011378m

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA) (PubMed:10758484). Induced transiently in response to the generalist herbivore S.littoralis. Triggered by methyl jasmonate (MeJA) and wounding (PubMed:16740150). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:16740150}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY062715	0.0	AY062715.1 Arabidopsis thaliana Strong similarity to zinc finger protein OBP2 (At1g07640; F24B9.30) mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	F24B9	0.0	AC007583.2 Arabidopsis thaliana chromosome 1 BAC F24B9 sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006306063.1	0.0	dof zinc finger protein DOF1.1 isoform X1
Swissprot	Q8L9V6	0.0	DOF11_ARATH; Dof zinc finger protein DOF1.1
TrEMBL	R0GT34	0.0	R0GT34_9BRAS; Uncharacterized protein
STRING	XP_006306063.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.3	1e-165	Dof family protein

Link Out ? help Back to Top
Phytozome	Carubv10011378m
Entrez Gene	17900831

Publications ? help Back to Top
Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]