PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011371m
Common NameCARUB_v10011371mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 237aa    MW: 25678.1 Da    PI: 4.1161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011371mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.87.6e-2074123255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +gr++AeIrdp++   +kr++lg+f+taeeAa+a++ a ++++g
  Carubv10011371m  74 RYRGVRKRP-WGRYAAEIRDPRK---KKRVWLGTFDTAEEAARAYDSASREFRG 123
                      69*******.**********843...6***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-2374132IPR016177DNA-binding domain
PROSITE profilePS5103224.81674131IPR001471AP2/ERF domain
PfamPF008477.8E-1474123IPR001471AP2/ERF domain
CDDcd000185.37E-3274131No hitNo description
Gene3DG3DSA:3.30.730.101.5E-3174132IPR001471AP2/ERF domain
SMARTSM003803.3E-3574137IPR001471AP2/ERF domain
PRINTSPR003671.8E-117586IPR001471AP2/ERF domain
PRINTSPR003671.8E-1197113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MTPQHDQENG TGGAADSREK IQEENLPGAA DSGEKIQEEN VTAGDADGKE KINEVNATGA  60
TDGGEKIEEE KEVRYRGVRK RPWGRYAAEI RDPRKKKRVW LGTFDTAEEA ARAYDSASRE  120
FRGANAITNF PLAVAGDGGS ASLTPVNNTV PLTESEMTFL LGSYDVLSPA AVAGFWRNIP  180
DAIELKDELV FPGGFEPQDM GFSIGLETPW DFEQEPEPEP SSAVEYEVNL DLNLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-22741311472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17897RKRPWGRYAAEIRDPRKKKR
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00124DAPTransfer from AT1G03800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011371m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306056.11e-171ethylene-responsive transcription factor 10
SwissprotQ9ZWA28e-55ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBLR0I9861e-170R0I986_9BRAS; Uncharacterized protein
STRINGXP_006306056.11e-170(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.14e-57ERF domain protein 10
Publications ? help Back to Top
  1. Lehmeyer M, et al.
    Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter.
    Plant Biotechnol. J., 2016. 14(1): p. 61-71
    [PMID:25819608]