PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011338m
Common NameCARUB_v10011338mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family STAT
Protein Properties Length: 674aa    MW: 76374.6 Da    PI: 5.7934
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011338mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.31.9e-582213381117
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkk 94 
                      ldvvl+na+gqpv+kdv+vvasLlyadsg++vek+ d+eapLL++y+Gvef++ed+p++ll+G+asfklkisqLs  +d+rLf+ikfeip++k+
  Carubv10011338m 221 LDVVLANAIGQPVHKDVKVVASLLYADSGTPVEKRTDSEAPLLVRYEGVEFTAEDKPCNLLNGCASFKLKISQLSPMSDKRLFCIKFEIPEVKA 314
                      8********************************************************************************************9 PP

             STAT  95 .ypfleavskpirCisrsrntrss 117
                       ypfle+v+++irCisr+r++ + 
  Carubv10011338m 315 yYPFLETVTNQIRCISRNRDSITP 338
                      88*****************98665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF498997.76E-828165IPR013320Concanavalin A-like lectin/glucanase domain
CDDcd103385.37E-66568672No hitNo description
SuperFamilySSF555502.85E-12576664IPR000980SH2 domain
Gene3DG3DSA:3.30.505.101.2E-8576634IPR000980SH2 domain
PROSITE profilePS5000110.123579647IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MAGDCAIDTK KYSLLEDFNV DVEVQSHDFE SFSLCFWVYL LDSTTYPSTI IRQVHSDMSV  60
SAPFLVLDEN KKMMLLPLTL LHKEAPDPVN ISSWTEVPNV STTAEFPLQK WVHVGCEVSR  120
NYMRLHICGE FVGEQVLTSL MTNGTNLDWA RKISLFSVGG DGYSVQGFIH CAEVLPSNVP  180
ANYHYTKDPP LWLSVDKPST SEIESDEDGV WTIVGGTFCS LDVVLANAIG QPVHKDVKVV  240
ASLLYADSGT PVEKRTDSEA PLLVRYEGVE FTAEDKPCNL LNGCASFKLK ISQLSPMSDK  300
RLFCIKFEIP EVKAYYPFLE TVTNQIRCIS RNRDSITPKR SNHINYLLDR GEKERASSNG  360
ISDIRRSSSM KRIRLGEEKV SQSEFGNGNG TSIQWKPQNH VEEDNSSTDS ENTEIKQSTG  420
FRRYTIPDSM IFRYCLANLI ERSLLLKEIT NNSSDEEVSQ FADQVSLYSG CSHHGYQIRM  480
ARKLIAEGTN AWILISRNYQ HVHWDNVVIE IEEHFMRIAK CSSRSLTHQD FELLRRICGC  540
YEYITQENFE KMWCWLFPVA SAISRGLING MWRSVSPKWI EGFVTKEEAE RSLQNQEPGT  600
FILRFPASRS WPHPDAGSLV VTYVGHDLLI HHKLLAIDHI CDSSERYTDA KPLQDMLLAE  660
PELSRLGRIV RGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011338m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0461800.0BT046180.1 Arabidopsis thaliana unknown protein (At1g17040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304512.10.0SH2 domain-containing protein A isoform X2
SwissprotB5X5610.0SHA_ARATH; SH2 domain-containing protein A
TrEMBLR0IGD00.0R0IGD0_9BRAS; Uncharacterized protein
STRINGXP_006304512.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17040.10.0SH2 domain protein A
Publications ? help Back to Top
  1. Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG
    A new family of transcription factors.
    Development, 2008. 135(18): p. 3093-101
    [PMID:18701541]