PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10011321m | ||||||||
Common Name | CARUB_v10011321mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 562aa MW: 63337.2 Da PI: 8.3994 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.1 | 2.8e-22 | 126 | 227 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+lt sd++++g l++pk+ a+e+ +g++ ++++ +d++ +W++k+++r++++r++lt+GW+ Fv + L +gD +++ + ++ Carubv10011321m 126 FMKILTASDTSTHGGLSVPKRSATEClppldMGIPVPTQDILTKDLHDSVWKFKHSFRGTPQRHLLTTGWSAFVTTKSLVVGDAFILL--RGET 217 89*****************************667777789***********************************************9..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+++r+ Carubv10011321m 218 GELRVGIRRA 227 99******97 PP | |||||||
2 | Auxin_resp | 97 | 2.8e-32 | 252 | 331 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a ha++++++F+v+++Pr+ s+F+vk++k+++a+++k+ vG+Rf m+fe +d+s +r+sGt++gv++++p +W++S+WrsL+ Carubv10011321m 252 ALHAFNNQCMFTVFFKPRS--SQFIVKYDKFLDAVNNKFNVGSRFTMRFEADDFSVKRYSGTIIGVNNFSP-HWKDSEWRSLQ 331 6799**************6..9*************************************************.*********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.2E-34 | 115 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-29 | 120 | 248 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.38E-20 | 125 | 226 | No hit | No description |
SMART | SM01019 | 2.4E-19 | 126 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.097 | 126 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-20 | 126 | 227 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.2E-28 | 252 | 331 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.4E-5 | 458 | 499 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 5.4E-10 | 461 | 539 | No hit | No description |
PROSITE profile | PS51745 | 24.983 | 463 | 544 | IPR000270 | PB1 domain |
Pfam | PF02309 | 7.1E-6 | 509 | 548 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 562 aa Download sequence Send to blast |
MDGCNVANVQ PDLSGTFYGS ESYMYEQLWK LCAGPLCHLP NLGDKVYYFP QGHIELVEAA 60 TREELNQIQS NFDLPSKLEC RVISVRLKAE KNTDQVYAEI TLIPDARQVV IPTQNDSQYR 120 PKVNSFMKIL TASDTSTHGG LSVPKRSATE CLPPLDMGIP VPTQDILTKD LHDSVWKFKH 180 SFRGTPQRHL LTTGWSAFVT TKSLVVGDAF ILLRGETGEL RVGIRRARHQ QGNITSSLVS 240 TENMRHGVIA SALHAFNNQC MFTVFFKPRS SQFIVKYDKF LDAVNNKFNV GSRFTMRFEA 300 DDFSVKRYSG TIIGVNNFSP HWKDSEWRSL QVQWDEFASF PRPEKVSPWE IEHIPPSSNV 360 PQSFLLKNKR SRHVNKIGSS SSSSPHLLPP ILTQNPEVVQ PSMTNEGGTS LRLFGVSLVV 420 PSGKNESYQV SNTSKLCQEK EFGLTQTFKL PKMAESKQFS STRSCTKVQM QGVTVGRALD 480 LSVLNGYDQL IYELEKLFDL GGELRSRNQW EMVFIDHEGD HVLIGDVPWL EFCNMVKKIL 540 ICSKEEVNKL KSERPISQTK S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-124 | 27 | 352 | 22 | 353 | Auxin response factor 1 |
4ldw_A | 1e-124 | 27 | 352 | 22 | 353 | Auxin response factor 1 |
4ldw_B | 1e-124 | 27 | 352 | 22 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10011321m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023633003.1 | 0.0 | putative auxin response factor 14 | ||||
Swissprot | Q9LQE8 | 0.0 | ARFN_ARATH; Putative auxin response factor 14 | ||||
TrEMBL | R0IP37 | 0.0 | R0IP37_9BRAS; Auxin response factor | ||||
STRING | XP_006306025.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12276 | 7 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G35540.1 | 0.0 | auxin response factor 14 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10011321m |
Entrez Gene | 17900259 |