PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011253m
Common NameCARUB_v10011253mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family NAC
Protein Properties Length: 453aa    MW: 51610.2 Da    PI: 7.4388
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011253mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.61e-52501771128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLpk + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s
  Carubv10011253m  50 LLPGFRFHPTDEELVSFYLKRKVQHNPLSI-ELIRQLDIYKYDPWDLPKFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYS 142
                      579***************************.89***************7777889*************************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Carubv10011253m 143 SeGNKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 177
                      956667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-5946209IPR003441NAC domain
PROSITE profilePS5100557.53250209IPR003441NAC domain
PfamPF023651.4E-2552177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MHAVHKLRAN VLFKFFITII SNVIQTFRLR VLEIMGERTD DGEQKMEEVL LPGFRFHPTD  60
EELVSFYLKR KVQHNPLSIE LIRQLDIYKY DPWDLPKFAM TGEKEWYFYC PRDRKYRNSS  120
RPNRVTGAGF WKATGTDRPI YSSEGNKCIG LKKSLVFYKG RAAKGVKTDW MMHEFRLPSL  180
SEPSPPSKRF FDSPVSPNDS WAICRIFKKT STTTLRALSH SFVSSLPPET SSDTMSDQKP  240
SNTYHFSSDK ILKTSSPFQF HHENMNTPKT SNSTTPSVAT ISPFSYLDFT SYDKPTSIFS  300
PVSCLEQQYL TNLFLSTQET QPQFPRPTLS NEIPSFLLNT SSNSTFLGMG EYTSHIDLSA  360
VLAQEECPAL VSLPQEFQEK GFEGNGIMKN MRGSNEDHHG HCDTLRYDVF TSTPDENHQH  420
HQGLKQNMTL LESYYSSLSS ISGDLPACFS TT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-565021317169NO APICAL MERISTEM PROTEIN
1ut4_B4e-565021317169NO APICAL MERISTEM PROTEIN
1ut7_A4e-565021317169NO APICAL MERISTEM PROTEIN
1ut7_B4e-565021317169NO APICAL MERISTEM PROTEIN
3swm_A4e-565021320172NAC domain-containing protein 19
3swm_B4e-565021320172NAC domain-containing protein 19
3swm_C4e-565021320172NAC domain-containing protein 19
3swm_D4e-565021320172NAC domain-containing protein 19
3swp_A4e-565021320172NAC domain-containing protein 19
3swp_B4e-565021320172NAC domain-containing protein 19
3swp_C4e-565021320172NAC domain-containing protein 19
3swp_D4e-565021320172NAC domain-containing protein 19
4dul_A4e-565021317169NAC domain-containing protein 19
4dul_B4e-565021317169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011253m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0055080.0AC005508.1 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023632826.10.0protein FEZ
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLR0GL880.0R0GL88_9BRAS; Uncharacterized protein
STRINGXP_006303608.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]