PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011113m
Common NameCARUB_v10011113mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family TCP
Protein Properties Length: 335aa    MW: 37309.8 Da    PI: 9.0461
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011113mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.91.9e-34501642135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                       g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i +l+  +++                    ++++++ 
  Carubv10011113m  50 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSITDLPPINTNFD------------------QNQTKS- 124
                      689************************************************************944444..................112222. PP

              TCP  96 kskksqksaasalnlak.esrakarararertrekmriknk 135
                         +s +s++s l+l++ e r kar+rarert+++  ++ +
  Carubv10011113m 125 -ACSSGTSESSLLSLSRtEIRGKARERARERTAKERDKDLQ 164
                      .333445666679999999*************999877755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.6E-2951169IPR005333Transcription factor, TCP
PROSITE profilePS5136930.78852110IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.461141159IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MELDEDVEVQ KQQQQQQSRK LQRFSDDNTG IMMKDWSNPS SRIIRVSRAS GGKDRHSKVL  60
TSKGLRDRRI RLSVATAIQF YDLQDRLGFD QPSKAVEWLI NAASDSITDL PPINTNFDQN  120
QTKSACSSGT SESSLLSLSR TEIRGKARER ARERTAKERD KDLQNAQSSF TQLLTGGFDQ  180
QQQQPNNNNR NNWTGGSDCF NPVQLMPNSS SSSQLPQEPT TMNQTNHPFS FVPDYNFGIS  240
SSSALNGGYS SRGTLQSNSQ SLFLNNNNIA QRSSISSSSS SSSPMDSQSI SFFMATPPPL  300
DHHSHQLPAT FDGRLYLYYG EGNRNSDDKG KDRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2057111155Putative transcription factor PCF6
5zkt_B3e-2057111155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011113m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0735061e-112AC073506.11 Arabidopsis thaliana chromosome 1 BAC F12P21 genomic sequence, complete sequence.
GenBankAY0350081e-112AY035008.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankAY0576721e-112AY057672.1 Arabidopsis thaliana At1g30210/F12P21_11 mRNA, complete cds.
GenBankAY1138981e-112AY113898.1 Arabidopsis thaliana unknown protein (At1g30210) mRNA, complete cds.
GenBankCP0026841e-112CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303201.10.0transcription factor TCP24
SwissprotQ9C7581e-176TCP24_ARATH; Transcription factor TCP24
TrEMBLR0I1L00.0R0I1L0_9BRAS; Uncharacterized protein
STRINGXP_006303201.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-117TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]