PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10011081m | ||||||||
Common Name | CARUB_v10011081mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36391.1 Da PI: 7.0705 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 19 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhP+d+elv++yL ++++++ ++ v+ +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l Carubv10011081m 19 LPPGFRFHPKDDELVCDYLMRRASSSLHHKPPlVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAIL 112 79********************998875553416999************8777799************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl Carubv10011081m 113 R-KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-60 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.038 | 19 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-26 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
METEEEMKES SISMVEAKLP PGFRFHPKDD ELVCDYLMRR ASSSLHHKPP LVLIQVDLNK 60 CEPWDIPKMA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM 120 RKTLVFYQGR APRGRKTDWV MHEFRLHGSY HPPDHSLTSP KEDWVLCRVF HKNTEGLICR 180 DNTGSCFDET ASASLPPLMD PYINFDQEPS SYLSDDQHFI INEHVPCFSN LSQNHTLNLT 240 SSVSELKTPC KNPNPLFTSA SSPATLTGLD SFSSSDQMVL RALLSQLTKI DGSLGDKESQ 300 NYGEGSSESL LTDIGIPSTA WKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-52 | 7 | 175 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10011081m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF198054 | 0.0 | AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds. | |||
GenBank | AY085996 | 0.0 | AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304448.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | R0GNI1 | 0.0 | R0GNI1_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304448.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10011081m |
Entrez Gene | 17898032 |