PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Carubv10011063m | ||||||||
Common Name | CARUB_v10011063mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 262aa MW: 30174.2 Da PI: 5.8722 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.8 | 1.6e-07 | 144 | 187 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + r+RR+ri ++ +eL +l+P + +K + ae+ A +Y+k Lq Carubv10011063m 144 VAARKRRRRITEKTQELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 187 677*******************98.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.49E-7 | 135 | 191 | No hit | No description |
SuperFamily | SSF47459 | 4.71E-11 | 136 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.43 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-10 | 140 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-8 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-5 | 145 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 262 aa Download sequence Send to blast |
DCFIPESDTF FFQAQPQQHP MHQSLDLDEA LSPSLFEFSH LYEPFLPPQD IFLPSPKTEV 60 FNESHDLDAF FPTRKHQKLS NSSFHFNSDE PFFPSSNLNL LDSYITETSN FSEFLVPDFS 120 PAFKVGWSDN KDDTKKPEVS AQSVAARKRR RRITEKTQEL GKLIPGSQKH NTAEMFHAAA 180 KYVKFLQAQI EILQLKQTKM QTWESSKVER EMQFLLASQE IQEKLSTEEV CVVPKEMVQV 240 LKAEGCILRN PRISRDLNKL L* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 146 | 150 | RKRRR |
2 | 147 | 152 | KRRRRI |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Carubv10011063m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305895.2 | 0.0 | transcription factor bHLH52 | ||||
Swissprot | Q9SA82 | 1e-127 | BH052_ARATH; Transcription factor bHLH52 | ||||
TrEMBL | R0INR8 | 0.0 | R0INR8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_006305895.1 | 0.0 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4547 | 25 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30670.1 | 1e-129 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Carubv10011063m |
Entrez Gene | 17896898 |
Publications ? help Back to Top | |||
---|---|---|---|
|