PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011057m
Common NameCARUB_v10011057mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 131aa    MW: 14534.8 Da    PI: 6.8076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011057mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-201666255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr+++ +g+++AeIrd ++ g   r++lg+f+tae+Aa+a+++a+ +++g
  Carubv10011057m 16 KFRGVRRRP-WGKYAAEIRDSRKHG--ERVWLGTFDTAEDAARAYDRAAYSMRG 66
                     89*******.**********65443..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-171675No hitNo description
Gene3DG3DSA:3.30.730.108.5E-321676IPR001471AP2/ERF domain
PROSITE profilePS5103223.4591674IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-231676IPR016177DNA-binding domain
PfamPF008472.5E-141666IPR001471AP2/ERF domain
SMARTSM003804.3E-351680IPR001471AP2/ERF domain
PRINTSPR003672.7E-111728IPR001471AP2/ERF domain
PRINTSPR003672.7E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MDQGGRSNGG GAEQVKFRGV RRRPWGKYAA EIRDSRKHGE RVWLGTFDTA EDAARAYDRA  60
AYSMRGQAAI LNFPHEYNMG AGSSTTAANT SSSSSQVFEF EYLDDSVLDE LLEYGENYNK  120
THNINNGKRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-5311071114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGRSNGGG
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011057m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains). Not affected by methyl jasmonate (MeJA), ethylene or salicylic acid (SA). {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264211e-129BT026421.1 Arabidopsis thaliana At1g04370 mRNA, complete cds.
GenBankCP0026841e-129CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF19P191e-129AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305893.15e-93ethylene-responsive transcription factor 14
SwissprotP938223e-61ERF97_ARATH; Ethylene-responsive transcription factor 14
TrEMBLR0GSM31e-91R0GSM3_9BRAS; Uncharacterized protein
STRINGCagra.1671s0052.1.p2e-92(Capsella grandiflora)
STRINGXP_006305893.12e-92(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-58Ethylene-responsive element binding factor 14