PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011023m
Common NameCARUB_v10011023mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 332aa    MW: 36378.9 Da    PI: 8.3466
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011023mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.75e-1752102155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +gr++AeIrdp    ++  r +lg+f+tae+Aa a++ a++ ++g
  Carubv10011023m  52 TRYRGVRRRP-WGRYAAEIRDP----ISkERRWLGTFDTAEQAACAYDSAARTFRG 102
                      68********.**********7....236999********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-2852111No hitNo description
PfamPF008479.0E-1052102IPR001471AP2/ERF domain
SMARTSM003808.2E-3153116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-2953110IPR001471AP2/ERF domain
PROSITE profilePS5103222.65553110IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2153111IPR016177DNA-binding domain
PRINTSPR003673.0E-95465IPR001471AP2/ERF domain
PRINTSPR003673.0E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0009880Biological Processembryonic pattern specification
GO:0010084Biological Processspecification of organ axis polarity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEALRNFHG SNETDPNPFT RSFTNTTSSP ANRKKSSKDT TVTVAGAGSS TTRYRGVRRR  60
PWGRYAAEIR DPISKERRWL GTFDTAEQAA CAYDSAARTF RGAKARTNFA YPTAVLVPDQ  120
RFSFSTKKSF PSVRCPLPSL PFDHHSTHEF YGAPAQQNIN TQSIFLRDAS CSSRVPSAFR  180
NSFNGSSSSY SAPKTASISS SETQNYESFF PEETSDSGLL QEVVHEFLKK NRSTPPPPPP  240
NPPPVTSLHE NSGDFSALTI YSDNMFQGTK EPLSSKLDRC GNSQGIEDSG YFDGVSAAAD  300
GGSTYGSNEW GYQEMLMYGA QLGCTCRRSW G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1946109771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011023m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304429.10.0ethylene-responsive transcription factor ESR1
SwissprotQ9SAD41e-152ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLR0GMZ60.0R0GMZ6_9BRAS; Uncharacterized protein
STRINGXP_006304429.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-137ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]