PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10011010m
Common NameCARUB_v10011010mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ARF
Protein Properties Length: 522aa    MW: 59124.5 Da    PI: 8.1651
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10011010mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.35.1e-22126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f k+lt sd++++g l++pk+ a+e+     + ++  ++++  +d++  +W++k+++r++++r++lt+GW+ Fv  + L +gD +++   + ++
  Carubv10011010m 126 FMKILTASDTSTHGGLSVPKRSATEClppldMDIPVPTQDILTKDLHDSVWKFKHSFRGTPQRHLLTTGWSAFVTTKSLVAGDAFILL--RGET 217
                      89****************************9556666779***********************************************9..4499 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +el+v+++r+
  Carubv10011010m 218 GELRVGIRRA 227
                      99******97 PP
2Auxin_resp96.63.6e-32252331183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a ha++++++F+vv++Pr+  s+F+vk++k+++a+++k+ vG+Rf m+fe ed+s +r+sGt++gv +++p +W++S+WrsL+
  Carubv10011010m 252 ALHAFNNQCMFTVVFKPRS--SQFIVKYDKFLDAVNNKFNVGSRFTMRFEAEDFSVKRYSGTIIGVDNFSP-HWKDSEWRSLQ 331
                      6799**************6..9*************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-35115239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.98E-30120248IPR015300DNA-binding pseudobarrel domain
CDDcd100176.52E-20125226No hitNo description
PfamPF023621.2E-19126227IPR003340B3 DNA binding domain
PROSITE profilePS5086312.238126228IPR003340B3 DNA binding domain
SMARTSM010191.5E-19126228IPR003340B3 DNA binding domain
PfamPF065072.2E-28252331IPR010525Auxin response factor
PfamPF023095.4E-10438521IPR033389AUX/IAA domain
SuperFamilySSF542775.4E-10442519No hitNo description
PROSITE profilePS5174525.838444522IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MDGCNVANVQ PDLSGTFYGS ESYMYEQLWK LCAGPLCHLP NLGDKVYYFP QGHIELVEAA  60
TREELNQIQS NFDLPSKLEC RVISVRLKAE KNTDQVYAEI TLIPDARQVV IPTQNDSQYR  120
PKVNSFMKIL TASDTSTHGG LSVPKRSATE CLPPLDMDIP VPTQDILTKD LHDSVWKFKH  180
SFRGTPQRHL LTTGWSAFVT TKSLVAGDAF ILLRGETGEL RVGIRRARHQ QGNITSSLVS  240
TENMRHGVIA SALHAFNNQC MFTVVFKPRS SQFIVKYDKF LDAVNNKFNV GSRFTMRFEA  300
EDFSVKRYSG TIIGVDNFSP HWKDSEWRSL QVQWDELASF PRPEKVSPWE IEHIPPSSNI  360
PQSFLLKNKR SRHVNKIEVV QPSMNNEGGT SLRLFGVSLV VPSGKNESYQ VSNTSKLCQK  420
KEFGLTQKFK LPKMAESKQF SSTRSCTKVQ MQGVTVGRAL DLSVLNGYDQ LIHELEKLFD  480
LGGELQSRNQ WEMVFIDHEG DHVLIGDVPW LEFCNMVKKI LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1252735222353Auxin response factor 1
4ldw_A1e-1252735222353Auxin response factor 1
4ldw_B1e-1252735222353Auxin response factor 1
4ldx_A1e-1252435219353Auxin response factor 1
4ldx_B1e-1252435219353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10011010m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633003.10.0putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLR0IK140.0R0IK14_9BRAS; Auxin response factor (Fragment)
STRINGXP_006304425.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12276731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14