PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010961m | ||||||||
Common Name | CARUB_v10010961mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25933.1 Da PI: 6.1687 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.8 | 1.9e-08 | 118 | 164 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h+ +Er RR++iN+++ L++l+P + k + a +L +eY++sL Carubv10010961m 118 SHSLAERVRREKINERLKCLQDLVPGC----YKTMGMAVMLDVIIEYVRSL 164 8*************************8....34477788888888888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.74E-10 | 112 | 169 | No hit | No description |
SuperFamily | SSF47459 | 3.66E-16 | 112 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-16 | 114 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.485 | 114 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-6 | 118 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.8E-8 | 120 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:2000488 | Biological Process | positive regulation of brassinosteroid biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MARFEPYNYS IGLNPFLAQL NHNPELINLD SPASTPSSFM LFSNGALVDA HHNNSHVSPN 60 LLQADSRRKC NKEERGSKRR RKRLEEEETM NNEEDDQTHQ KPKDVVHVRA KRGQATDSHS 120 LAERVRREKI NERLKCLQDL VPGCYKTMGM AVMLDVIIEY VRSLENQIEF LSMKLSAASA 180 YYDLNSLDIE PTDIFQGGNM SNAEEMERIL RESVGTQPPN FSSTFPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 66 | 82 | RRKCNKEERGSKRRRKR |
2 | 66 | 83 | RRKCNKEERGSKRRRKRL |
3 | 67 | 83 | RKCNKEERGSKRRRKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010961m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK175757 | 0.0 | AK175757.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH075), complete cds, clone: RAFL22-31-M12. | |||
GenBank | AY088885 | 0.0 | AY088885.1 Arabidopsis thaliana clone 98716 mRNA, complete sequence. | |||
GenBank | DQ446289 | 0.0 | DQ446289.1 Arabidopsis thaliana clone pENTR221-At1g25330 basic helix-loop-helix family protein (At1g25330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006303530.1 | 1e-170 | transcription factor bHLH75 | ||||
Swissprot | A4D998 | 1e-128 | BH075_ARATH; Transcription factor bHLH75 | ||||
TrEMBL | R0IHS8 | 1e-169 | R0IHS8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006303530.1 | 1e-170 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14081 | 20 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25330.1 | 1e-123 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010961m |
Entrez Gene | 17900162 |
Publications ? help Back to Top | |||
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