PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010909m | ||||||||
Common Name | CARUB_v10010909mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | TCP | ||||||||
Protein Properties | Length: 169aa MW: 18328.4 Da PI: 11.0559 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 26.3 | 2.4e-08 | 42 | 70 | 2 | 30 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaa 30 ++ k++++++h kv+gR+RR R+sa caa Carubv10010909m 42 TPTKRPSKDRHIKVDGRGRRLRISAICAA 70 6789************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.3E-4 | 48 | 70 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MESHKNNNKK NHHQTTGLTH LVPFIRPIST PNSTTTVSTT TTPTKRPSKD RHIKVDGRGR 60 RLRISAICAA PTTQTIPANI STLNVSLRSS GRRASQNAAV FGFQQQLYNP KPFREEEPNS 120 LDQEPGSSSP KPGSEALNQE PGLTQSRTQN MIHTTYVGSG GSNVSLDK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010909m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023632857.1 | 3e-78 | LOW QUALITY PROTEIN: transcription factor TCP23 | ||||
Swissprot | Q9LQF0 | 1e-44 | TCP23_ARATH; Transcription factor TCP23 | ||||
TrEMBL | R0IG14 | 1e-119 | R0IG14_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304392.1 | 1e-120 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7053 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35560.1 | 7e-33 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010909m |
Entrez Gene | 17899765 |