PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010907m
Common NameCARUB_v10010907mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family MIKC_MADS
Protein Properties Length: 337aa    MW: 38149.6 Da    PI: 4.8695
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010907mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.7e-27958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++++l  +s
  Carubv10010907m  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSDRLSLFS 58
                     79******************************************998776 PP
2K-box14.12e-06120187976
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleq 76 
                        +++ e+l++e+ +L++++++ ++e++++  + +   s+++ +  e+qL + l+++ +++++ll ++
  Carubv10010907m 120 SINSDVEELEREVCRLQQQLQMAEEELKRYEPDPVRFTSMEDYEVCEKQLLDTLSHVLQRRDHLLSSH 187
                      5577899********************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.156161IPR002100Transcription factor, MADS-box
CDDcd002653.83E-34275No hitNo description
SuperFamilySSF554556.15E-29280IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SDRLSLFSGK  60
TRIEDVFTRF INLPKQERES ACFPDHSRHP DIQSKECLLR ILQQLKTEND IALQHTNPTS  120
INSDVEELER EVCRLQQQLQ MAEEELKRYE PDPVRFTSME DYEVCEKQLL DTLSHVLQRR  180
DHLLSSHHLS SYDAASTMQQ SIAGPFVNDV VEGWLPESGH NQTHLFDASA HSNQLRELSS  240
AMYEPLLQGS SSSSNQNNMS ECHVTSHNGE MFPEWAQAYS SSALFAPMQQ QHGGVVPSIE  300
EMMPAQQGDI PAVTTEAQAD PEISDYETKV PQLSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A3e-16270168Myocyte-specific enhancer factor 2A
3mu6_B3e-16270168Myocyte-specific enhancer factor 2A
3mu6_C3e-16270168Myocyte-specific enhancer factor 2A
3mu6_D3e-16270168Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010907m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303516.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLR0I2E60.0R0I2E6_9BRAS; Uncharacterized protein
STRINGXP_006303516.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]