PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010429m | ||||||||
Common Name | CARUB_v10010429mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | B3 | ||||||||
Protein Properties | Length: 179aa MW: 20135.2 Da PI: 10.5034 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 104.4 | 6e-33 | 14 | 121 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ tpsdv+k++rlv+pk++ae+h + +++++ + led++g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F Carubv10010429m 14 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpamttatgmNPSPTKGLLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCF 107 89*********************************98866677999************************************************ PP EE-SSSEE..EEEE CS B3 83 kldgrsefelvvkv 96 +++ +++l++ + Carubv10010429m 108 ERSTGPDRQLYIDW 121 *8766777777765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-41 | 7 | 126 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.89E-32 | 12 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.07E-28 | 13 | 110 | No hit | No description |
Pfam | PF02362 | 1.5E-29 | 14 | 121 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.057 | 14 | 125 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-25 | 14 | 125 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MLNDAVSKAR EVLFEKAVTP SDVGKLNRLV IPKQHAEKHF PLPAMTTATG MNPSPTKGLL 60 INLEDRTGKV WRFRYSYWNS SQSYVLTKGW SRFVKEKNLR AGDVVCFERS TGPDRQLYID 120 WKVRSSPVQT VVRLFGVNIF NDRPNGVAVD CTGGKKRSRD DDLFSLGCSK KQTIINIL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 6e-59 | 11 | 125 | 11 | 118 | DNA-binding protein RAV1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010429m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079281 | 0.0 | AC079281.4 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete sequence. | |||
GenBank | AY091069 | 0.0 | AY091069.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | AY122941 | 0.0 | AY122941.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g25560) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006304241.1 | 1e-131 | AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
Swissprot | Q9C6M5 | 1e-115 | RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1 | ||||
TrEMBL | R0I4E5 | 1e-129 | R0I4E5_9BRAS; Uncharacterized protein | ||||
STRING | XP_006304241.1 | 1e-130 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25560.1 | 1e-118 | RAV family protein |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010429m |
Entrez Gene | 17900630 |