PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010423m
Common NameCARUB_v10010423mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 180aa    MW: 19446.8 Da    PI: 10.0703
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010423mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.8e-1876142155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng........kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIr+  +  +g        k     r++lg+f taeeAa a+++a+ +l g
  Carubv10010423m  76 KKFRGVRQRP-WGKWAAEIRCgRRAhDGggggggnrKGgrpERIWLGTFETAEEAALAYDNAAIQLLG 142
                      59********.**********6555933467888862267***********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.14E-2476149No hitNo description
PfamPF008471.3E-1277142IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1777150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-2677150IPR001471AP2/ERF domain
PROSITE profilePS5103221.1477150IPR001471AP2/ERF domain
SMARTSM003804.4E-2977156IPR001471AP2/ERF domain
PRINTSPR003671.4E-117889IPR001471AP2/ERF domain
PRINTSPR003671.4E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MKRIVRISFT DLEATDSSSS EDESSPPPPS KRRGKKLVRE IVLDPPDSAD AGKKTRFKIR  60
IPAMFLAAKK TIENKKKFRG VRQRPWGKWA AEIRCGRRAH DGGGGGGGNR KGGRPERIWL  120
GTFETAEEAA LAYDNAAIQL LGPDAPTNFG RPDVDEDSPA VEKDSDAGSS DKTPESSVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-1676149159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-15771491471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010423m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304240.11e-126ethylene-responsive transcription factor ERF069
SwissprotQ8W4I51e-66ERF69_ARATH; Ethylene-responsive transcription factor ERF069
TrEMBLR0IJL41e-125R0IJL4_9BRAS; Uncharacterized protein
STRINGCagra.0114s0006.1.p1e-126(Capsella grandiflora)
STRINGXP_006304240.11e-126(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]