PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Carubv10010390m | ||||||||
Common Name | CARUB_v10010390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
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Family | LBD | ||||||||
Protein Properties | Length: 187aa MW: 20820.7 Da PI: 5.2744 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.6 | 2.1e-43 | 30 | 128 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da++s+vyeAear+rdPvyG++g i +lq+q+++l+a+l Carubv10010390m 30 PCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRADAVRSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQL 123 7********************************************************************************************* PP DUF260 95 allke 99 a+++ Carubv10010390m 124 AKAQV 128 *9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.134 | 29 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-43 | 30 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MERNGDASAA TAPIISSSSS PPPPRVVLSP CAACKILRRR CADKCVLAPY FPPTDPAKFT 60 IAHRVFGASN IIKFLQELPE SQRADAVRSM VYEAEARIRD PVYGCAGAIY HLQRQVSELQ 120 AQLAKAQVEM VNVQLQRSSL LELIYNMDQV QKQEQDNMSF ESNDLGFLED NSNTNSSMLW 180 WDPLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-42 | 29 | 131 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-42 | 29 | 131 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Carubv10010390m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473841 | 0.0 | AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006305673.1 | 1e-137 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 1e-115 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | R0GS20 | 1e-136 | R0GS20_9BRAS; Uncharacterized protein | ||||
STRING | XP_006305673.1 | 1e-137 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-116 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Carubv10010390m |
Entrez Gene | 17897385 |