PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010374m
Common NameCARUB_v10010374mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 191aa    MW: 20715.4 Da    PI: 9.8295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010374mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-191766255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y+GVr ++ +gr++AeIrdp++   ++r++lg+f+ta++Aa+a++ a+++++g
  Carubv10010374m 17 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDSAAREFRG 66
                     59*******.**********654...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-351780IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-221775IPR016177DNA-binding domain
CDDcd000187.02E-311774No hitNo description
PfamPF008479.5E-131766IPR001471AP2/ERF domain
PROSITE profilePS5103224.0261774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-321774IPR001471AP2/ERF domain
PRINTSPR003673.6E-111829IPR001471AP2/ERF domain
PRINTSPR003673.6E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MTKPDPTRES NAAKEIRYRG VRKRPWGRYA AEIRDPVKKT RVWLGTFDTA QQAARAYDSA  60
AREFRGSKAK TNFPTFLELH GDVKQEGAFV ASPCQSSTVV NSSSPKTVRF VTPPQLELSL  120
GCGGAYRRIP VARPVYYFNV TTTTAAFPKV AVACGIQSES ETSSVVDFEG GAGKITQPLD  180
LDLNLAPPAE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-211274972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00202DAPTransfer from AT1G53170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010374m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0368847e-43AB036884.1 Arabidopsis thaliana AtERF8 mRNA for ERF transcription factor8, complete cds.
GenBankAC0080077e-43AC008007.7 Genomic sequence for Arabidopsis thaliana BAC F12M16 from chromosome I, complete sequence.
GenBankAC0225207e-43AC022520.2 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence.
GenBankAK1175417e-43AK117541.1 Arabidopsis thaliana At1g53170 mRNA for putative ethylene responsive element binding factor 8 (ERF8), complete cds, clone: RAFL17-19-H19.
GenBankBT0054017e-43BT005401.1 Arabidopsis thaliana clone U50346 putative ethylene responsive element binding factor 8 (At1g53170) mRNA, complete cds.
GenBankCP0026847e-43CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305665.11e-139ethylene-responsive transcription factor 8
SwissprotQ9MAI51e-74ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBLR0IN881e-137R0IN88_9BRAS; Uncharacterized protein
STRINGXP_006305665.11e-138(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.13e-65ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Cao FY, et al.
    Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity.
    BMC Plant Biol., 2018. 18(1): p. 211
    [PMID:30261844]