PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010303m
Common NameCARUB_v10010303mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 208aa    MW: 23463.2 Da    PI: 4.6898
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010303mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.73.8e-152979155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     + y+G+r++    +Wv+e+r+p     +  +r++lg++ ta++Aa+a++ a ++l+g
  Carubv10010303m 29 PVYRGIRRRN-GDKWVCEVREP-----ThqRRIWLGTYPTADMAARAHDVAVLSLRG 79
                     68*****877.9*********8.....336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-102979IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-283089IPR001471AP2/ERF domain
SMARTSM003801.4E-223093IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-193089IPR016177DNA-binding domain
PROSITE profilePS5103221.5623087IPR001471AP2/ERF domain
PRINTSPR003673.2E-73142IPR001471AP2/ERF domain
CDDcd000188.66E-253189No hitNo description
PRINTSPR003673.2E-75369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNNNEEINLA EMRPKKRAGR TVFKETRHPV YRGIRRRNGD KWVCEVREPT HQRRIWLGTY  60
PTADMAARAH DVAVLSLRGR SACLNFADSA WRLPVPESND PDVIRRVAAE AAEMFRPAEF  120
GGGITVLPFS GDDADMGSGS GSGSGSEEMY SPSYGYGDYE EVSTTMMRLA EEPLMSPPRS  180
YMEDMTPNVY MEEETCYEDM SLWSYNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-131786371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010303m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303182.11e-153dehydration-responsive element-binding protein 1F
SwissprotQ9LN861e-123DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLR0ID231e-152R0ID23_9BRAS; Uncharacterized protein
STRINGCagra.0568s0171.1.p1e-152(Capsella grandiflora)
STRINGXP_006303182.11e-152(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-112ERF family protein
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]
  3. Song GQ,Gao X
    Transcriptomic changes reveal gene networks responding to the overexpression of a blueberry DWARF AND DELAYED FLOWERING 1 gene in transgenic blueberry plants.
    BMC Plant Biol., 2017. 17(1): p. 106
    [PMID:28629320]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]