PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010259m
Common NameCARUB_v10010259mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family ERF
Protein Properties Length: 219aa    MW: 23630.2 Da    PI: 5.2611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010259mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-183787155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Carubv10010259m 37 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 87
                     59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.20E-173797No hitNo description
SuperFamilySSF541714.25E-183896IPR016177DNA-binding domain
PROSITE profilePS5103221.7593896IPR001471AP2/ERF domain
SMARTSM003802.0E-3238102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-293897IPR001471AP2/ERF domain
PfamPF008471.8E-113887IPR001471AP2/ERF domain
PRINTSPR003675.0E-93950IPR001471AP2/ERF domain
PRINTSPR003675.0E-96177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045088Biological Processregulation of innate immune response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900030Biological Processregulation of pectin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVKTLQKATK KMSPSPSSSS SSSTSSSTSS SSIRMMKKYK GVRMRSWGSW VSEIRAPNQK  60
TRIWLGSYST AEAAARAYDA ALLCLKGSSA NNLNFPEIST SLYNIINNGD SNNDMSPKSI  120
QRVAAAAAAS DKTDLSSSSS VSTSSPLLSS PSEDLYDVVS MSSHYDQQVV SLSESSSWYN  180
CFDGDDQFMF INGVSSAPCL PLSDDFFEEG DIRLWNFC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00185DAPTransfer from AT1G44830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010259m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5608390.0AY560839.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g44830) mRNA, complete cds.
GenBankBT0252700.0BT025270.1 Arabidopsis thaliana At1g44830 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT12C220.0AC020576.2 Sequence of BAC T12C22 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304191.11e-157ethylene-responsive transcription factor ERF014
SwissprotQ9LPE82e-81ERF14_ARATH; Ethylene-responsive transcription factor ERF014
TrEMBLR0I4A51e-155R0I4A5_9BRAS; Uncharacterized protein
STRINGXP_006304191.11e-156(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144091822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-75ERF family protein
Publications ? help Back to Top
  1. Zhang H,Hong Y,Huang L,Li D,Song F
    Arabidopsis AtERF014 acts as a dual regulator that differentially modulates immunity against Pseudomonas syringae pv. tomato and Botrytis cinerea.
    Sci Rep, 2016. 6: p. 30251
    [PMID:27445230]