PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010105m

Common Name

CARUB_v10010105mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

ERF

Protein Properties

Length: 250aa MW: 27725.2 Da PI: 4.4615

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010105m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.6	7.6e-19	86	136	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + k r++lg+f+taeeAa a+++a+ +l+g Carubv10010105m 86 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 136 69*****.******32..2.24*********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.25E-29	85	144	No hit	No description
SuperFamily	SSF54171	9.15E-22	86	145	IPR016177	DNA-binding domain
PROSITE profile	PS51032	22.669	86	144	IPR001471	AP2/ERF domain
Pfam	PF00847	2.1E-13	86	136	IPR001471	AP2/ERF domain
SMART	SM00380	3.1E-36	86	150	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	86	144	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-11	87	98	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.0E-11	110	126	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0009753	Biological Process	response to jasmonic acid
GO:0009861	Biological Process	jasmonic acid and ethylene-dependent systemic resistance
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MESQTSFFSR DFSPENSSSS SWSSQESFFW EDSFLHQSFD QPFLLSSPTN YYSDDFFSFG 60 PSSIIKEEEE DDATVAAEEE EEEEKSYRGV RKRPWGKYAA EIRDSTRKGI RVWLGTFDTA 120 EEAALAYDQA AFALKGSLAV LNYPSDVVAE SLRKMENVNL NDGESPVVAL KRKHSMRNRP 180 RGKKKSSPSS FTSSPSNSSS SSSPSSSSSL SSTSRKQSVV TTQESDTTTL VVLEDLGAEY 240 LEELMRSCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	2e-27	83	146	11	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Acts as an essential integrator of the JA and ethylene signal transduction pathways. Activates the expression of the PDF1.2A gene. {ECO:0000269\|PubMed:18467450}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00023	PBM	Transfer from AT1G06160	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010105m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303295.1	1e-179	ethylene-responsive transcription factor ERF094
Swissprot	Q9LND1	3e-98	ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBL	R0IH79	1e-178	R0IH79_9BRAS; Uncharacterized protein
STRING	XP_006303295.1	1e-179	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3990	18	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06160.1	8e-81	octadecanoid-responsive Arabidopsis AP2/ERF 59

Link Out ? help Back to Top
Phytozome	Carubv10010105m
Entrez Gene	17896655

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zander M,Thurow C,Gatz C TGA Transcription Factors Activate the Salicylic Acid-Suppressible Branch of the Ethylene-Induced Defense Program by Regulating ORA59 Expression. Plant Physiol., 2014. 165(4): p. 1671-1683 [PMID:24989234] Wang F, et al. TaNAC1 acts as a negative regulator of stripe rust resistance in wheat, enhances susceptibility to Pseudomonas syringae, and promotes lateral root development in transgenic Arabidopsis thaliana. Front Plant Sci, 2015. 6: p. 108 [PMID:25774162] Lehmeyer M, et al. Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter. Plant Biotechnol. J., 2016. 14(1): p. 61-71 [PMID:25819608] Caarls L,Pieterse CM,Van Wees SC How salicylic acid takes transcriptional control over jasmonic acid signaling. Front Plant Sci, 2015. 6: p. 170 [PMID:25859250] Wang C, et al. The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorum. Plant Physiol., 2015. 169(1): p. 856-72 [PMID:26143252] Wang C, et al. Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola. Plant J., 2015. 83(6): p. 1019-33 [PMID:26216741] Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract. Plant Physiol., 2016. 170(4): p. 2432-43 [PMID:26884488] Caarls L, et al. Assessing the Role of ETHYLENE RESPONSE FACTOR Transcriptional Repressors in Salicylic Acid-Mediated Suppression of Jasmonic Acid-Responsive Genes. Plant Cell Physiol., 2017. 58(2): p. 266-278 [PMID:27837094] He X,Jiang J,Wang CQ,Dehesh K ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression. J Integr Plant Biol, 2017. 59(4): p. 275-287 [PMID:28168848] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Li X,Yang R,Chen H The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA. PLoS ONE, 2018. 13(3): p. e0193458 [PMID:29513733]