PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10010086m

Common Name

CARUB_v10010086mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 253aa MW: 28834.1 Da PI: 5.2475

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10010086m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd++lv ++ ++G g+W+ +++ g++R++k+c++rw+++l Carubv10010086m 14 RGEWTEEEDQKLVAYIDEYGVGDWRFLPERAGLRRCGKSCRLRWLNFL 61 89********************************************97 PP
2	Myb_DNA-binding	54.1	3.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T++E++ ++ ++ lG++ W++Ia+ m+ +R+++++k++w++ Carubv10010086m 67 KGKFTPQEEQTIISLHSVLGNR-WAAIAQQMP-NRSDNDIKNHWNSC 111 79******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.083	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.47E-29	12	108	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-14	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.67E-10	16	61	No hit	No description
PROSITE profile	PS51294	25.171	62	116	IPR017930	Myb domain
SMART	SM00717	4.6E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.74E-9	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-24	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MGRATWFEAD GTKRGEWTEE EDQKLVAYID EYGVGDWRFL PERAGLRRCG KSCRLRWLNF 60 LRPGINKGKF TPQEEQTIIS LHSVLGNRWA AIAQQMPNRS DNDIKNHWNS CLKKRLERNG 120 INPVTHQPFV SNLVVKTSLF NTECSSSSSA NASPSFSSGS ACLLNKIATG ISSRQHCVDR 180 MKNILSGSRT TSIHCHEEEE DEGEELNRDD HEKILASGYQ EEDFLMWDEE ELRRFMEEIG 240 VMEFGTTSYD CN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-28	14	117	7	109	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the control of epidermal cell morphogenesis in petals. Promotes unidirectional cell expansion once outgrowth has been initiated (PubMed:17376813). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). Functions as a major regulator of cuticle formation in vegetative organs by regulating the cuticle biosynthesis genes CYP86A8/LCR and CER1 (PubMed:24169067). {ECO:0000269\|PubMed:17376813, ECO:0000269\|PubMed:23709630, ECO:0000269\|PubMed:24169067}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Carubv10010086m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303290.1	0.0	transcription factor MYB34
Swissprot	Q9LXF1	1e-57	MYB16_ARATH; Transcription factor MYB16
TrEMBL	R0IH74	0.0	R0IH74_9BRAS; Uncharacterized protein
STRING	XP_006303290.1	0.0	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18710.1	4e-93	myb domain protein 47

Link Out ? help Back to Top
Phytozome	Carubv10010086m
Entrez Gene	17899884

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang BH, et al. Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae). Int J Mol Sci, 2015. 16(3): p. 5900-21 [PMID:25782156] Cui F, et al. Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation. Mol Plant, 2016. 9(6): p. 926-38 [PMID:27060495]