PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10010076m
Common NameCARUB_v10010076mg
Organism
Capsella rubella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29511.8 Da    PI: 4.9704
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10010076mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-1770123356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eql++Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  Carubv10010076m  70 KKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 123
                      456899**********************************************99 PP
2HD-ZIP_I/II122.81.7e-3969161193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlEkdy+ Lkr++d+l++ene L++++++L++++++
  Carubv10010076m  69 EKKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDILKRQFDSLRDENEVLQTQNQKLQAQVMA 161
                      69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-1953127IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.8E-1857125IPR009057Homeodomain-like
PROSITE profilePS5007117.10365125IPR001356Homeobox domain
SMARTSM003893.0E-1768129IPR001356Homeobox domain
PfamPF000469.8E-1570123IPR001356Homeobox domain
CDDcd000861.95E-1470126No hitNo description
PRINTSPR000314.5E-696105IPR000047Helix-turn-helix motif
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6105121IPR000047Helix-turn-helix motif
PfamPF021833.3E-15125165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNNGLAFF PPNFSLQNHH QEEEDHPQLL QDFNGFLGKR SPMNNVQGFC NLEMNGEEEY  60
SDDGSKMGEK KRRLNMEQLK TLEKNFELGN KLESDRKLEL ARALGLQPRQ IAIWFQNRRA  120
RSKTKQLEKD YDILKRQFDS LRDENEVLQT QNQKLQAQVM ALKSREPIES INLNKDTEGS  180
CSDRSENISG DIRPPEMDSQ FALGHPPTAT TMQFFQNPSS EQRMVKEENS ISNMFCGIDD  240
QSGFWPWLDQ QHYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCarubv10010076m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2280560.0AK228056.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-55-J15.
GenBankAY0849130.0AY084913.1 Arabidopsis thaliana clone 121220 mRNA, complete sequence.
GenBankBT0097270.0BT009727.1 Arabidopsis thaliana At1g26960 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304126.10.0homeobox-leucine zipper protein ATHB-23
SwissprotQ8LFD31e-180ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLR0I4580.0R0I458_9BRAS; Uncharacterized protein
STRINGXP_006304126.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.10.0homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]